vdj_pipe::File_ostream Class Reference

#include <file_stream.hpp>

Inheritance diagram for vdj_pipe::File_ostream:

Collaboration diagram for vdj_pipe::File_ostream:

Classes
struct	Err

Public Member Functions
	File_ostream (const format::Format fmt)
	File_ostream (File_output const &fout, const std::ios_base::openmode mode=(std::ios_base::openmode) 0)
std::ostream &	ostream ()
void	write (std::string const &descr, Seq_record::sequence const &seq)
void	write (std::string const &descr, const boost::string_ref seq)
void	write (std::string const &descr, Qual_record::quality const &qual)
void	write (std::string const &descr, Seq_record::sequence const &seq, Qual_record::quality const &qual)
Public Member Functions inherited from vdj_pipe::File_output
	File_output (const format::Format fmt)
	File_output (std::string const &path, const compression::Compression compr=compression::unknown, const format::Format fmt=format::unknown)
Public Member Functions inherited from vdj_pipe::File
	File (std::string const &path, const compression::Compression compr=compression::unknown, const format::Format fmt=format::unknown)
std::string const &	path () const
format::Format	format () const
compression::Compression	compression () const
bool	operator== (File const &f2) const
bool	operator< (File const &f2) const

Private Types
typedef boost::scoped_ptr< std::ofstream >	ofs_ptr
typedef boost::scoped_ptr< std::ostream >	os_ptr
typedef boost::iostreams::filtering_ostreambuf	fosb_t
typedef boost::scoped_ptr< fosb_t >	fosb_ptr

Static Private Member Functions
static fosb_t *	make_fosb (std::ostream &os, const compression::Compression compr)
static std::ios_base::openmode	guess_mode (const std::ios_base::openmode mode, const compression::Compression compr)

Private Attributes
ofs_ptr	ofs_
fosb_ptr	fosb_
os_ptr	fosb_os_
std::ostream &	os_

Additional Inherited Members
Protected Attributes inherited from vdj_pipe::File
std::string	path_
compression::Compression	compr_
format::Format	fmt_

Member Typedef Documentation

typedef boost::scoped_ptr<fosb_t> vdj_pipe::File_ostream::fosb_ptr

private

typedef boost::iostreams::filtering_ostreambuf vdj_pipe::File_ostream::fosb_t

private

typedef boost::scoped_ptr<std::ofstream> vdj_pipe::File_ostream::ofs_ptr

private

typedef boost::scoped_ptr<std::ostream> vdj_pipe::File_ostream::os_ptr

private

Constructor & Destructor Documentation

vdj_pipe::File_ostream::File_ostream

(

const format::Format

fmt

)

vdj_pipe::File_ostream::File_ostream ( File_output const &  fout, const std::ios_base::openmode  mode = (std::ios_base::openmode)0  )

explicit

Member Function Documentation

std::ios_base::openmode vdj_pipe::File_ostream::guess_mode ( const std::ios_base::openmode  mode, const compression::Compression  compr  )

staticprivate

File_ostream::fosb_t * vdj_pipe::File_ostream::make_fosb ( std::ostream &  os, const compression::Compression  compr  )

staticprivate

std::ostream& vdj_pipe::File_ostream::ostream ( )

inline

void vdj_pipe::File_ostream::write	(	std::string const &	descr,
		Seq_record::sequence const &	seq
	)

void vdj_pipe::File_ostream::write	(	std::string const &	descr,
		const boost::string_ref	seq
	)

void vdj_pipe::File_ostream::write	(	std::string const &	descr,
		Qual_record::quality const &	qual
	)

void vdj_pipe::File_ostream::write	(	std::string const &	descr,
		Seq_record::sequence const &	seq,
		Qual_record::quality const &	qual
	)

Member Data Documentation

fosb_ptr vdj_pipe::File_ostream::fosb_

private

os_ptr vdj_pipe::File_ostream::fosb_os_

private

ofs_ptr vdj_pipe::File_ostream::ofs_

private

std::ostream& vdj_pipe::File_ostream::os_

private

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The documentation for this class was generated from the following files:

• include/vdj_pipe/file_stream.hpp
• lib/file_stream.cpp