vdj_pipe
pipeline for processing DNA sequence data
|
This is the complete list of members for vdj_pipe::File_ostream, including all inherited members.
compr_ | vdj_pipe::File | protected |
compression() const | vdj_pipe::File | inline |
File(std::string const &path, const compression::Compression compr=compression::unknown, const format::Format fmt=format::unknown) | vdj_pipe::File | inlineexplicit |
File_ostream(const format::Format fmt) | vdj_pipe::File_ostream | |
File_ostream(File_output const &fout, const std::ios_base::openmode mode=(std::ios_base::openmode) 0) | vdj_pipe::File_ostream | explicit |
File_output(const format::Format fmt) | vdj_pipe::File_output | inline |
File_output(std::string const &path, const compression::Compression compr=compression::unknown, const format::Format fmt=format::unknown) | vdj_pipe::File_output | inlineexplicit |
fmt_ | vdj_pipe::File | protected |
format() const | vdj_pipe::File | inline |
fosb_ | vdj_pipe::File_ostream | private |
fosb_os_ | vdj_pipe::File_ostream | private |
fosb_ptr typedef | vdj_pipe::File_ostream | private |
fosb_t typedef | vdj_pipe::File_ostream | private |
guess_mode(const std::ios_base::openmode mode, const compression::Compression compr) | vdj_pipe::File_ostream | privatestatic |
make_fosb(std::ostream &os, const compression::Compression compr) | vdj_pipe::File_ostream | privatestatic |
ofs_ | vdj_pipe::File_ostream | private |
ofs_ptr typedef | vdj_pipe::File_ostream | private |
operator<(File const &f2) const | vdj_pipe::File | inline |
operator==(File const &f2) const | vdj_pipe::File | inline |
os_ | vdj_pipe::File_ostream | private |
os_ptr typedef | vdj_pipe::File_ostream | private |
ostream() | vdj_pipe::File_ostream | inline |
path() const | vdj_pipe::File | inline |
path_ | vdj_pipe::File | protected |
write(std::string const &descr, Seq_record::sequence const &seq) | vdj_pipe::File_ostream | |
write(std::string const &descr, const boost::string_ref seq) | vdj_pipe::File_ostream | |
write(std::string const &descr, Qual_record::quality const &qual) | vdj_pipe::File_ostream | |
write(std::string const &descr, Seq_record::sequence const &seq, Qual_record::quality const &qual) | vdj_pipe::File_ostream |