vdj_pipe::Apply_one Class Reference

Apply enclosed processing step once to a sequence read of specified kind: forward, reverse, or merged. More...

#include <apply_to_adaptor.hpp>

Public Types
typedef Vm_access_paired	vma_type

Public Member Functions
	VDJ_PIPE_STATIC_STRING_METHOD (comment,"apply specified step to either forward, reverse, or merged sequences") Apply_one(step_variant_single const &step)
void	run ()
void	finish ()
void	summary (std::ostream &os) const

Private Attributes
step_variant_single	step_

Detailed Description

Apply enclosed processing step once to a sequence read of specified kind: forward, reverse, or merged.

Member Typedef Documentation

typedef Vm_access_paired vdj_pipe::Apply_one::vma_type

Member Function Documentation

void vdj_pipe::Apply_one::finish ( )

inline

void vdj_pipe::Apply_one::run ( )

inline

void vdj_pipe::Apply_one::summary ( std::ostream &  os ) const

inline

vdj_pipe::Apply_one::VDJ_PIPE_STATIC_STRING_METHOD ( comment  , "apply specified step to either  forward, reverse  , or merged sequences"    ) const

inline

Member Data Documentation

step_variant_single vdj_pipe::Apply_one::step_

private

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The documentation for this class was generated from the following file:

• include/vdj_pipe/step/apply_to_adaptor.hpp