vdj_pipe::match::Match_element_positional Class Reference

Identify DNA sequence interval by position only. More...

#include <me_positional.hpp>

Collaboration diagram for vdj_pipe::match::Match_element_positional:

Classes
struct	Err

Public Types
typedef boost::string_ref	sequence
typedef Qual_record::quality	quality

Public Member Functions
	Match_element_positional (Value_map const &vm, std::string const &match_value_name, Relative_interval const &ri)
	Match_element_positional (Value_map const &vm, std::string const &match_value_name, const int pos, const bool re_start, const int length)
sequence_interval	operator() (const sequence seq, quality const &, sequence_interval const &si)
void	finish ()

Private Member Functions
	Match_element_positional (Value_map const &, std::string const &, const std::size_t, const std::size_t, const std::size_t)
sequence_interval	result (const sequence seq=sequence(), sequence_interval const &si=sequence_interval_invalid())

Private Attributes
Value_map	vm_
Val_id	name_val_id_
Relative_interval	ri_

Detailed Description

Identify DNA sequence interval by position only.

Member Typedef Documentation

typedef Qual_record::quality vdj_pipe::match::Match_element_positional::quality

typedef boost::string_ref vdj_pipe::match::Match_element_positional::sequence

Constructor & Destructor Documentation

vdj_pipe::match::Match_element_positional::Match_element_positional ( Value_map const &  , std::string const &  , const std::size_t  , const std::size_t  , const std::size_t    )

private

vdj_pipe::match::Match_element_positional::Match_element_positional ( Value_map const &  vm, std::string const &  match_value_name, Relative_interval const &  ri  )

inline

vdj_pipe::match::Match_element_positional::Match_element_positional ( Value_map const &  vm, std::string const &  match_value_name, const int  pos, const bool  re_start, const int  length  )

inline

Member Function Documentation

void vdj_pipe::match::Match_element_positional::finish ( )

inline

sequence_interval vdj_pipe::match::Match_element_positional::operator() ( const sequence  seq, quality const &  , sequence_interval const &  si  )

inline

sequence_interval vdj_pipe::match::Match_element_positional::result ( const sequence  seq = sequence(), sequence_interval const &  si = sequence_interval_invalid()  )

inlineprivate

Member Data Documentation

Val_id vdj_pipe::match::Match_element_positional::name_val_id_

private

Relative_interval vdj_pipe::match::Match_element_positional::ri_

private

Value_map vdj_pipe::match::Match_element_positional::vm_

private

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The documentation for this class was generated from the following file:

• lib/me_positional.hpp