vdj_pipe::match::Match_combination Class Reference

#include <me_combination.hpp>

Collaboration diagram for vdj_pipe::match::Match_combination:

Classes
struct	Err

Public Member Functions
	Match_combination (Value_map const &vm, std::string const &val_name, std::vector< std::size_t > const &mev, detail::string_table const &st)
sequence_interval	operator() (const sequence seq, interval_vector const &iv)

Private Types
typedef boost::unordered_map< std::string, Seq_id >	seq_map
typedef seq_map::const_iterator	map_iter
typedef std::vector< seq_map >	seq_map_vector
typedef std::vector< Seq_id >	id_vector
typedef boost::unordered_map< id_vector, std::string >	name_map
typedef name_map::const_iterator	name_iter
typedef boost::string_ref	sequence

Private Attributes
Value_map	vm_
Val_id	val_id_
std::vector< std::size_t >	mev_
seq_map_vector	smv_
name_map	nm_

Member Typedef Documentation

typedef std::vector<Seq_id> vdj_pipe::match::Match_combination::id_vector

private

typedef seq_map::const_iterator vdj_pipe::match::Match_combination::map_iter

private

typedef name_map::const_iterator vdj_pipe::match::Match_combination::name_iter

private

typedef boost::unordered_map<id_vector, std::string> vdj_pipe::match::Match_combination::name_map

private

typedef boost::unordered_map<std::string, Seq_id> vdj_pipe::match::Match_combination::seq_map

private

typedef std::vector<seq_map> vdj_pipe::match::Match_combination::seq_map_vector

private

typedef boost::string_ref vdj_pipe::match::Match_combination::sequence

private

Constructor & Destructor Documentation

vdj_pipe::match::Match_combination::Match_combination ( Value_map const &  vm, std::string const &  val_name, std::vector< std::size_t > const &  mev, detail::string_table const &  st  )

inline

Member Function Documentation

sequence_interval vdj_pipe::match::Match_combination::operator() ( const sequence  seq, interval_vector const &  iv  )

inline

Member Data Documentation

std::vector<std::size_t> vdj_pipe::match::Match_combination::mev_

private

name_map vdj_pipe::match::Match_combination::nm_

private

seq_map_vector vdj_pipe::match::Match_combination::smv_

private

Val_id vdj_pipe::match::Match_combination::val_id_

private

Value_map vdj_pipe::match::Match_combination::vm_

private

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The documentation for this class was generated from the following file:

• lib/me_combination.hpp