vdj_pipe
pipeline for processing DNA sequence data
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process paired reads with external MIDs More...
#include <pipe_paired_emid_read.hpp>
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struct | Err |
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Pipe_paired_emid_read (boost::property_tree::ptree const &pt) | |
void | run () |
Pipe_environment const & | pe () const |
Private Member Functions | |
void | process_fastq (Seq_file_entry const &sfe) |
void | process_fasta_qual (Seq_file_entry const &sfe) |
void | store_records (Parser_fastq &psf, Parser_fastq &psr, Parser_fastq &pmf, Parser_fastq &pmr) |
Private Attributes | |
Vm_access_paired_emid | vma_ |
Pipe_environment | pe_ |
process paired reads with external MIDs
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void vdj_pipe::Pipe_paired_emid_read::run | ( | ) |
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