vdj_pipe::gdst::Common_subseq Struct Reference

Common subsequence. More...

#include <common_subsequence.hpp>

Collaboration diagram for vdj_pipe::gdst::Common_subseq:

Public Member Functions
	Common_subseq (const unsigned start=0, const unsigned len=0)

Public Attributes
unsigned	start_
	match starting position in pattern More...
unsigned	len_
	match length More...
detail::Vector_set< super_seq >	seq_

Detailed Description

Common subsequence.

Constructor & Destructor Documentation

vdj_pipe::gdst::Common_subseq::Common_subseq ( const unsigned  start = 0, const unsigned  len = 0  )

inlineexplicit

Member Data Documentation

unsigned vdj_pipe::gdst::Common_subseq::len_

match length

detail::Vector_set<super_seq> vdj_pipe::gdst::Common_subseq::seq_

set of sequence IDs and match starting positions

unsigned vdj_pipe::gdst::Common_subseq::start_

match starting position in pattern

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The documentation for this struct was generated from the following file:

• include/vdj_pipe/gdst/common_subsequence.hpp