vdj_pipe::Write_value Class Reference

#include <write_value_step.hpp>

Inheritance diagram for vdj_pipe::Write_value:

Collaboration diagram for vdj_pipe::Write_value:

Public Types
typedef Value_map	vma_type
Public Types inherited from vdj_pipe::detail::Step_base
typedef Seq_record::sequence	seq_type
typedef Qual_record::quality	qual_type

Public Member Functions
	VDJ_PIPE_STATIC_STRING_METHOD (comment,"write specified values") Write_value(vma_type const &vma
void	reset_access (Value_ids_single const &ids)
void	run ()
void	finish ()
void	summary (std::ostream &os) const
Public Member Functions inherited from vdj_pipe::detail::Step_base
char	delimiter () const
	Step_base (boost::property_tree::ptree const &pt, Pipe_environment const &pe)
void	summary (std::ostream &) const

Public Attributes
boost::property_tree::ptree const &	pt
boost::property_tree::ptree const Pipe_environment &	pe

Private Member Functions
std::vector< Val_id >	get_ids ()
std::string	make_header () const

Static Private Member Functions
static std::vector< std::string >	get_names (boost::property_tree::ptree const &pt)

Private Attributes
Value_map	vma_
std::vector< std::string >	v_names_
std::vector< Val_id >	v_ids_
File_ostream_variant	fov_
std::size_t	n_seq_

Member Typedef Documentation

typedef Value_map vdj_pipe::Write_value::vma_type

Member Function Documentation

void vdj_pipe::Write_value::finish ( )

inline

std::vector< Val_id > vdj_pipe::Write_value::get_ids ( )

private

std::vector< std::string > vdj_pipe::Write_value::get_names ( boost::property_tree::ptree const &  pt )

staticprivate

std::string vdj_pipe::Write_value::make_header ( ) const

private

void vdj_pipe::Write_value::reset_access ( Value_ids_single const &  ids )

inline

void vdj_pipe::Write_value::run

(

)

void vdj_pipe::Write_value::summary

(

std::ostream &

os

)

const

vdj_pipe::Write_value::VDJ_PIPE_STATIC_STRING_METHOD	(	comment	,
		"write specified values"
	)		const

Member Data Documentation

File_ostream_variant vdj_pipe::Write_value::fov_

private

std::size_t vdj_pipe::Write_value::n_seq_

private

boost::property_tree::ptree const Pipe_environment& vdj_pipe::Write_value::pe

boost::property_tree::ptree const& vdj_pipe::Write_value::pt

std::vector<Val_id> vdj_pipe::Write_value::v_ids_

private

std::vector<std::string> vdj_pipe::Write_value::v_names_

private

Value_map vdj_pipe::Write_value::vma_

private

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The documentation for this class was generated from the following files:

• include/vdj_pipe/step/write_value_step.hpp
• lib/write_value_step.cpp