7 #ifndef WRITE_VALUE_STEP_HPP_ 8 #define WRITE_VALUE_STEP_HPP_ 11 #include "boost/property_tree/ptree_fwd.hpp" 12 #include "boost/shared_ptr.hpp" 22 class Value_ids_single;
34 "write specified values"
47 void summary(std::ostream& os)
const;
56 static std::vector<std::string>
59 std::vector<Val_id> get_ids();
61 std::string make_header()
const;
Definition: sanitize_string.cpp:15
Select output file based on variables in value map.
Definition: file_ostream_variant.hpp:27
void finish()
Definition: write_value_step.hpp:46
Main namespace of vdj_pipe library.
Definition: keywords_variable.hpp:11
Definition: pipe_environment.hpp:26
Definition: step_base.hpp:23
#define VDJ_PIPE_DECL
Definition: config.hpp:23
Provides access to standard values for single read pipeline.
Definition: value_names.hpp:33
Definition: write_value_step.hpp:27
Value_map vma_
Definition: write_value_step.hpp:50
#define VDJ_PIPE_STATIC_STRING_METHOD(name, val)
Definition: keyword_struct_macro.hpp:12
Value_map vma_type
Definition: write_value_step.hpp:29
Store values mapped against name strings and value IDs.
Definition: value_map.hpp:23
std::vector< Val_id > v_ids_
Definition: write_value_step.hpp:52
std::vector< std::string > v_names_
Definition: write_value_step.hpp:51
bpt::ptree ptree
Definition: processing_step_utils.hpp:19
File_ostream_variant fov_
Definition: write_value_step.hpp:53
std::size_t n_seq_
Definition: write_value_step.hpp:54