vdj_pipe::Pipe_paired_read Class Reference

process paired reads with external MIDs More...

#include <pipe_paired_read.hpp>

Collaboration diagram for vdj_pipe::Pipe_paired_read:

Classes
struct	Err

Public Member Functions
	Pipe_paired_read (boost::property_tree::ptree const &pt)
void	run ()
Pipe_environment const &	pe () const

Private Member Functions
void	check () const
void	process_fastq (Seq_file_entry const &sfe)
void	process_fasta_qual (Seq_file_entry const &sfe)
void	store_records (Seq_qual_record const &r_fwd, Seq_qual_record const &r_rev)

Private Attributes
Vm_access_paired	vma_
Pipe_environment	pe_

Detailed Description

process paired reads with external MIDs

Constructor & Destructor Documentation

vdj_pipe::Pipe_paired_read::Pipe_paired_read ( boost::property_tree::ptree const &  pt )

explicit

Member Function Documentation

void vdj_pipe::Pipe_paired_read::check ( ) const

private

Pipe_environment const& vdj_pipe::Pipe_paired_read::pe ( ) const

inline

void vdj_pipe::Pipe_paired_read::process_fasta_qual ( Seq_file_entry const &  sfe )

private

void vdj_pipe::Pipe_paired_read::process_fastq ( Seq_file_entry const &  sfe )

private

void vdj_pipe::Pipe_paired_read::run

(

)

void vdj_pipe::Pipe_paired_read::store_records ( Seq_qual_record const &  r_fwd, Seq_qual_record const &  r_rev  )

private

Member Data Documentation

Pipe_environment vdj_pipe::Pipe_paired_read::pe_

private

Vm_access_paired vdj_pipe::Pipe_paired_read::vma_

private

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The documentation for this class was generated from the following files:

• include/vdj_pipe/pipe_paired_read.hpp
• lib/pipe_paired_read.cpp