vdj_pipe::Pipe_single_read Class Reference

#include <pipe_single_read.hpp>

Collaboration diagram for vdj_pipe::Pipe_single_read:

Classes
struct	Err

Public Member Functions
	Pipe_single_read (boost::property_tree::ptree const &pt)
void	run ()
Pipe_environment const &	pe () const

Private Member Functions
void	process_fastq (Seq_file_entry const &sfe)
void	process_fasta_qual (Seq_file_entry const &sfe)
void	check () const

Private Attributes
Vm_access_single	vma_
Pipe_environment	pe_

Constructor & Destructor Documentation

vdj_pipe::Pipe_single_read::Pipe_single_read ( boost::property_tree::ptree const &  pt )

explicit

Member Function Documentation

void vdj_pipe::Pipe_single_read::check ( ) const

private

Pipe_environment const& vdj_pipe::Pipe_single_read::pe ( ) const

inline

void vdj_pipe::Pipe_single_read::process_fasta_qual ( Seq_file_entry const &  sfe )

private

void vdj_pipe::Pipe_single_read::process_fastq ( Seq_file_entry const &  sfe )

private

void vdj_pipe::Pipe_single_read::run

(

)

Member Data Documentation

Pipe_environment vdj_pipe::Pipe_single_read::pe_

private

Vm_access_single vdj_pipe::Pipe_single_read::vma_

private

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The documentation for this class was generated from the following files:

• include/vdj_pipe/pipe_single_read.hpp
• lib/pipe_single_read.cpp