vdj_pipe::Read_info_store Class Reference

Store sequence-related information. More...

#include <read_info_store.hpp>

Inheritance diagram for vdj_pipe::Read_info_store:

Collaboration diagram for vdj_pipe::Read_info_store:

Classes
struct	Err

Public Types
typedef name_citer_t	const_iterator
typedef info_size_index_t::const_iterator	size_iterator
typedef boost::iterator_range< size_iterator >	size_range

Public Member Functions
	Read_info_store ()
std::size_t	size () const
bool	empty () const
const_iterator	begin () const
const_iterator	end () const
size_range	by_size () const
size_range	by_size (const unsigned size) const
size_range	by_size_range (const unsigned from, const unsigned to=std::numeric_limits< unsigned >::max()) const
Read_info const &	operator[] (const Read_id iid) const
Read_id const *	find (const boost::string_ref id, const bool reverse) const
Read_id	insert (Read_info const &ri)

Private Types
typedef detail::Id_map< Read_id, Read_info >	info_map_t
typedef detail::Getter< info_map_t, Read_id, Read_info, std::string const &,&Read_info::name >	get_name
typedef detail::Getter< info_map_t, Read_id, Read_info, unsigned,&Read_info::size >	get_info_size
typedef boost::multi_index_container< Read_id, boost::multi_index::indexed_by< boost::multi_index::hashed_non_unique< boost::multi_index::tag< struct name_tag >, get_name >, boost::multi_index::ordered_non_unique< boost::multi_index::tag< struct size_tag >, get_info_size > > >	info_mi_t
typedef info_mi_t::index< name_tag >::type	name_index_t
typedef name_index_t::const_iterator	name_citer_t
typedef name_index_t::iterator	name_iter
typedef boost::iterator_range< name_iter >	name_range
typedef info_mi_t::index< size_tag >::type	info_size_index_t

Private Member Functions
name_iter	find_iter (const boost::string_ref id, const bool reverse) const

Static Private Member Functions
static info_mi_t::ctor_args_list	info_index_init (info_map_t const &im)

Private Attributes
info_map_t	info_map_
info_mi_t	info_index_

Detailed Description

Store sequence-related information.

Member Typedef Documentation

typedef name_citer_t vdj_pipe::Read_info_store::const_iterator

typedef detail::Getter< info_map_t, Read_id, Read_info, unsigned, &Read_info::size > vdj_pipe::Read_info_store::get_info_size

private

typedef detail::Getter< info_map_t, Read_id, Read_info, std::string const&, &Read_info::name > vdj_pipe::Read_info_store::get_name

private

typedef detail::Id_map<Read_id, Read_info> vdj_pipe::Read_info_store::info_map_t

private

typedef boost::multi_index_container< Read_id, boost::multi_index::indexed_by< boost::multi_index::hashed_non_unique< boost::multi_index::tag<struct name_tag>, get_name >, boost::multi_index::ordered_non_unique< boost::multi_index::tag<struct size_tag>, get_info_size > > > vdj_pipe::Read_info_store::info_mi_t

private

typedef info_mi_t::index<size_tag>::type vdj_pipe::Read_info_store::info_size_index_t

private

typedef name_index_t::const_iterator vdj_pipe::Read_info_store::name_citer_t

private

typedef info_mi_t::index<name_tag>::type vdj_pipe::Read_info_store::name_index_t

private

typedef name_index_t::iterator vdj_pipe::Read_info_store::name_iter

private

typedef boost::iterator_range<name_iter> vdj_pipe::Read_info_store::name_range

private

typedef info_size_index_t::const_iterator vdj_pipe::Read_info_store::size_iterator

typedef boost::iterator_range<size_iterator> vdj_pipe::Read_info_store::size_range

Constructor & Destructor Documentation

vdj_pipe::Read_info_store::Read_info_store ( )

inline

Member Function Documentation

const_iterator vdj_pipe::Read_info_store::begin ( ) const

inline

size_range vdj_pipe::Read_info_store::by_size ( ) const

inline

Returns

range of all sequence info IDs ordered by size

size_range vdj_pipe::Read_info_store::by_size ( const unsigned  size ) const

inline

Returns

range of sequence info IDs of % size size

size_range vdj_pipe::Read_info_store::by_size_range ( const unsigned  from, const unsigned  to = std::numeric_limits<unsigned>::max()  ) const

inline

Returns

range of sequence info IDs that have % size in the range [from, to)

bool vdj_pipe::Read_info_store::empty ( ) const

inline

const_iterator vdj_pipe::Read_info_store::end ( ) const

inline

Read_id const* vdj_pipe::Read_info_store::find ( const boost::string_ref  id, const bool  reverse  ) const

inline

name_iter vdj_pipe::Read_info_store::find_iter ( const boost::string_ref  id, const bool  reverse  ) const

inlineprivate

static info_mi_t::ctor_args_list vdj_pipe::Read_info_store::info_index_init ( info_map_t const &  im )

inlinestaticprivate

Read_id vdj_pipe::Read_info_store::insert ( Read_info const &  ri )

inline

Read_info const& vdj_pipe::Read_info_store::operator[] ( const Read_id  iid ) const

inline

std::size_t vdj_pipe::Read_info_store::size ( ) const

inline

Member Data Documentation

info_mi_t vdj_pipe::Read_info_store::info_index_

private

info_map_t vdj_pipe::Read_info_store::info_map_

private

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The documentation for this class was generated from the following file:

• include/vdj_pipe/read_info_store.hpp