vdj_pipe::gdst::Pattern_iter Class Reference

Navigate suffix tree according to pattern. More...

#include <pattern_iterator.hpp>

Collaboration diagram for vdj_pipe::gdst::Pattern_iter:

Public Member Functions
	Pattern_iter (Gdst const &t, const boost::string_ref suff, const Branch_id bid)
Branch_id	current () const
bool	at_end () const
Branch_id	next_id () const
bool	at_pattern_end () const
bool	at_mismatch () const
unsigned	index () const
Nucleotide	pattern_char () const
Nucleotide	edge_char () const
Nucleotide	node_char () const
bool	has_next () const
void	next ()

Private Member Functions
void	check_state ()

Private Attributes
Gdst const &	t_
const boost::string_ref	patt_
Branch_id	curr_
bool	at_end_
Branch_id	next_
bool	at_pattern_end_
bool	mismatch_
unsigned	pi_
Nucleotide	ec_
Nucleotide	nc_

Detailed Description

Navigate suffix tree according to pattern.

Constructor & Destructor Documentation

vdj_pipe::gdst::Pattern_iter::Pattern_iter ( Gdst const &  t, const boost::string_ref  suff, const Branch_id  bid  )

inline

Member Function Documentation

bool vdj_pipe::gdst::Pattern_iter::at_end ( ) const

inline

Returns

true if current node is at the end of the pattern

bool vdj_pipe::gdst::Pattern_iter::at_mismatch ( ) const

inline

bool vdj_pipe::gdst::Pattern_iter::at_pattern_end ( ) const

inline

void vdj_pipe::gdst::Pattern_iter::check_state ( )

private

Branch_id vdj_pipe::gdst::Pattern_iter::current ( ) const

inline

Nucleotide vdj_pipe::gdst::Pattern_iter::edge_char ( ) const

inline

bool vdj_pipe::gdst::Pattern_iter::has_next ( ) const

inline

unsigned vdj_pipe::gdst::Pattern_iter::index ( ) const

inline

void vdj_pipe::gdst::Pattern_iter::next ( )

inline

Branch_id vdj_pipe::gdst::Pattern_iter::next_id ( ) const

inline

Nucleotide vdj_pipe::gdst::Pattern_iter::node_char ( ) const

inline

Nucleotide vdj_pipe::gdst::Pattern_iter::pattern_char ( ) const

inline

Member Data Documentation

bool vdj_pipe::gdst::Pattern_iter::at_end_

private

bool vdj_pipe::gdst::Pattern_iter::at_pattern_end_

private

Branch_id vdj_pipe::gdst::Pattern_iter::curr_

private

Nucleotide vdj_pipe::gdst::Pattern_iter::ec_

private

bool vdj_pipe::gdst::Pattern_iter::mismatch_

private

Nucleotide vdj_pipe::gdst::Pattern_iter::nc_

private

Branch_id vdj_pipe::gdst::Pattern_iter::next_

private

const boost::string_ref vdj_pipe::gdst::Pattern_iter::patt_

private

unsigned vdj_pipe::gdst::Pattern_iter::pi_

private

Gdst const& vdj_pipe::gdst::Pattern_iter::t_

private

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The documentation for this class was generated from the following files:

• include/vdj_pipe/gdst/pattern_iterator.hpp
• lib/pattern_iterator.cpp