vdj_pipe
pipeline for processing DNA sequence data
|
#include <pipeline.hpp>
Public Member Functions | |
Pipeline (Pipe_environment const &pe) | |
Pipeline (boost::property_tree::ptree const &pt, Pipe_environment const &pe) | |
void | add_step (boost::property_tree::ptree const &pt) |
void | add_step (processing_step const &step) |
vm_access const & | value_map () const |
vm_access & | value_map () |
void | process_read () |
std::size_t | size () const |
processing_step const & | step (const std::size_t n) const |
void | run () |
void | finalize () |
Static Public Member Functions | |
static std::string const & | name () |
Private Types | |
typedef Config::input_step | input_step |
typedef Config::processing_step | processing_step |
typedef Config::value_map_access | vm_access |
typedef std::vector< processing_step > | step_vector |
Private Attributes | |
Pipe_environment | pe_ |
input_step | ins_ |
step_vector | sv_ |
vm_access | vma_ |
|
private |
|
private |
|
private |
|
private |
|
inlineexplicit |
|
inline |
|
inline |
|
inline |
|
inline |
|
inlinestatic |
|
inline |
|
inline |
|
inline |
|
inline |
|
inline |
|
inline |
|
private |
|
private |
|
private |
|
private |