vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Pipeline< Config > Member List

This is the complete list of members for vdj_pipe::Pipeline< Config >, including all inherited members.

add_step(boost::property_tree::ptree const &pt)vdj_pipe::Pipeline< Config >inline
add_step(processing_step const &step)vdj_pipe::Pipeline< Config >inline
finalize()vdj_pipe::Pipeline< Config >inline
input_step typedefvdj_pipe::Pipeline< Config >private
ins_vdj_pipe::Pipeline< Config >private
name()vdj_pipe::Pipeline< Config >inlinestatic
pe_vdj_pipe::Pipeline< Config >private
Pipeline(Pipe_environment const &pe)vdj_pipe::Pipeline< Config >inlineexplicit
Pipeline(boost::property_tree::ptree const &pt, Pipe_environment const &pe)vdj_pipe::Pipeline< Config >inline
process_read()vdj_pipe::Pipeline< Config >inline
processing_step typedefvdj_pipe::Pipeline< Config >private
run()vdj_pipe::Pipeline< Config >inline
size() const vdj_pipe::Pipeline< Config >inline
step(const std::size_t n) const vdj_pipe::Pipeline< Config >inline
step_vector typedefvdj_pipe::Pipeline< Config >private
sv_vdj_pipe::Pipeline< Config >private
value_map() const vdj_pipe::Pipeline< Config >inline
value_map()vdj_pipe::Pipeline< Config >inline
vm_access typedefvdj_pipe::Pipeline< Config >private
vma_vdj_pipe::Pipeline< Config >private