vdj_pipe::Parser_fasta Class Reference

#include <parser_fasta.hpp>

Inheritance diagram for vdj_pipe::Parser_fasta:

Collaboration diagram for vdj_pipe::Parser_fasta:

Public Types
typedef Seq_record	record
typedef record::sequence	sequence

Public Member Functions
	Parser_fasta (File_input const &fi)
	Parser_fasta (std::istream &is, const compression::Compression compr=compression::none)
const boost::string_ref	get_id ()
void	next_record ()
const boost::string_ref	get_defstr ()
sequence	get_sequence ()
record	get_record ()
Public Member Functions inherited from vdj_pipe::detail::Parser_line
int	line_num () const
bool	has_next () const

Additional Inherited Members
Protected Member Functions inherited from vdj_pipe::detail::Parser_line
	Parser_line (File_input const &fi)
	Parser_line (std::istream &is, const compression::Compression compr)
void	skip_line ()
void	seek_line (const char tag)
const boost::string_ref	get_id (const char tag)
void	set_meta (Seq_meta &sm, const char tag)
const boost::string_ref	get_defstr (const char tag)
std::string	get_sequence (const char tag)
void	check () const
Protected Attributes inherited from vdj_pipe::detail::Parser_line
File_istream	fis_
std::string	str_
int	line_

Member Typedef Documentation

typedef Seq_record vdj_pipe::Parser_fasta::record

typedef record::sequence vdj_pipe::Parser_fasta::sequence

Constructor & Destructor Documentation

vdj_pipe::Parser_fasta::Parser_fasta ( File_input const &  fi )

inlineexplicit

vdj_pipe::Parser_fasta::Parser_fasta ( std::istream &  is, const compression::Compression  compr = compression::none  )

inlineexplicit

Member Function Documentation

const boost::string_ref vdj_pipe::Parser_fasta::get_defstr ( )

inline

const boost::string_ref vdj_pipe::Parser_fasta::get_id ( )

inline

record vdj_pipe::Parser_fasta::get_record ( )

inline

sequence vdj_pipe::Parser_fasta::get_sequence ( )

inline

void vdj_pipe::Parser_fasta::next_record ( )

inline

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The documentation for this class was generated from the following file:

• include/vdj_pipe/parser_fasta.hpp