vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Parser_fasta Member List

This is the complete list of members for vdj_pipe::Parser_fasta, including all inherited members.

check() const vdj_pipe::detail::Parser_lineinlineprotected
fis_vdj_pipe::detail::Parser_lineprotected
get_defstr()vdj_pipe::Parser_fastainline
vdj_pipe::detail::Parser_line::get_defstr(const char tag)vdj_pipe::detail::Parser_lineinlineprotected
get_id()vdj_pipe::Parser_fastainline
vdj_pipe::detail::Parser_line::get_id(const char tag)vdj_pipe::detail::Parser_lineinlineprotected
get_record()vdj_pipe::Parser_fastainline
get_sequence()vdj_pipe::Parser_fastainline
vdj_pipe::detail::Parser_line::get_sequence(const char tag)vdj_pipe::detail::Parser_lineinlineprotected
has_next() const vdj_pipe::detail::Parser_lineinline
line_vdj_pipe::detail::Parser_lineprotected
line_num() const vdj_pipe::detail::Parser_lineinline
next_record()vdj_pipe::Parser_fastainline
Parser_fasta(File_input const &fi)vdj_pipe::Parser_fastainlineexplicit
Parser_fasta(std::istream &is, const compression::Compression compr=compression::none)vdj_pipe::Parser_fastainlineexplicit
Parser_line(File_input const &fi)vdj_pipe::detail::Parser_lineinlineexplicitprotected
Parser_line(std::istream &is, const compression::Compression compr)vdj_pipe::detail::Parser_lineinlineexplicitprotected
record typedefvdj_pipe::Parser_fasta
seek_line(const char tag)vdj_pipe::detail::Parser_lineinlineprotected
sequence typedefvdj_pipe::Parser_fasta
set_meta(Seq_meta &sm, const char tag)vdj_pipe::detail::Parser_lineinlineprotected
skip_line()vdj_pipe::detail::Parser_lineinlineprotected
str_vdj_pipe::detail::Parser_lineprotected