vdj_pipe::Match_step Class Reference

#include <match_step.hpp>

Inheritance diagram for vdj_pipe::Match_step:

Collaboration diagram for vdj_pipe::Match_step:

Public Member Functions
	Match_step (Vm_access_single const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe)
void	run ()
void	finish ()
void	summary (std::ostream &os) const
Public Member Functions inherited from vdj_pipe::detail::Step_base_single
void	reset_access (Value_ids_single const &ids)
Public Member Functions inherited from vdj_pipe::detail::Step_base
char	delimiter () const
	Step_base (boost::property_tree::ptree const &pt, Pipe_environment const &pe)
void	summary (std::ostream &) const

Private Types
typedef boost::shared_ptr< match::Match_element_battery >	me_battery_ptr

Private Attributes
me_battery_ptr	mb_
bool	trim_
bool	reverse_

Additional Inherited Members
Public Types inherited from vdj_pipe::detail::Step_base_single
typedef Vm_access_single	vma_type
Public Types inherited from vdj_pipe::detail::Step_base
typedef Seq_record::sequence	seq_type
typedef Qual_record::quality	qual_type
Protected Member Functions inherited from vdj_pipe::detail::Step_base_single
	Step_base_single (vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment const &pe)
Protected Attributes inherited from vdj_pipe::detail::Step_base_single
Vm_access_single	vma_

Member Typedef Documentation

typedef boost::shared_ptr<match::Match_element_battery> vdj_pipe::Match_step::me_battery_ptr

private

Constructor & Destructor Documentation

vdj_pipe::Match_step::Match_step	(	Vm_access_single const &	vma,
		boost::property_tree::ptree const &	pt,
		Pipe_environment &	pe
	)

Member Function Documentation

void vdj_pipe::Match_step::finish

(

)

void vdj_pipe::Match_step::run

(

)

void vdj_pipe::Match_step::summary

(

std::ostream &

os

)

const

Member Data Documentation

me_battery_ptr vdj_pipe::Match_step::mb_

private

bool vdj_pipe::Match_step::reverse_

private

bool vdj_pipe::Match_step::trim_

private

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The documentation for this class was generated from the following files:

• include/vdj_pipe/step/match_step.hpp
• lib/match_step.cpp