vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Pipe_environment Member List

This is the complete list of members for vdj_pipe::Pipe_environment, including all inherited members.

BOOST_STATIC_CONSTANT(std::size_t, unset=static_cast< std::size_t >(-1))vdj_pipe::Pipe_environmentprivate
delimiter() const vdj_pipe::Pipe_environmentinline
finish()vdj_pipe::Pipe_environment
finish_file()vdj_pipe::Pipe_environment
im_vdj_pipe::Pipe_environmentprivate
in_manager_ptr typedefvdj_pipe::Pipe_environmentprivate
input() const vdj_pipe::Pipe_environmentinline
input()vdj_pipe::Pipe_environmentinline
input_csv(boost::property_tree::ptree const &pt, std::vector< std::string > &vs)vdj_pipe::Pipe_environmentprivatestatic
is_running_vdj_pipe::Pipe_environmentprivate
max_file_reads() const vdj_pipe::Pipe_environmentinline
max_file_reads_vdj_pipe::Pipe_environmentprivate
max_reads() const vdj_pipe::Pipe_environmentinline
max_reads_vdj_pipe::Pipe_environmentprivate
om_vdj_pipe::Pipe_environmentprivate
out_manager_ptr typedefvdj_pipe::Pipe_environmentprivate
output() const vdj_pipe::Pipe_environmentinline
output()vdj_pipe::Pipe_environmentinline
Pipe_environment(boost::property_tree::ptree const &pt, Value_map const &vm)vdj_pipe::Pipe_environment
print_summary(std::ostream &os) const vdj_pipe::Pipe_environmentprivate
process_more()vdj_pipe::Pipe_environmentinline
process_read()vdj_pipe::Pipe_environment
read_count() const vdj_pipe::Pipe_environment
reads_skipped_vdj_pipe::Pipe_environmentprivate
start_file(std::string const &fn)vdj_pipe::Pipe_environment
steps() const vdj_pipe::Pipe_environmentinline
steps()vdj_pipe::Pipe_environmentinline
steps_vdj_pipe::Pipe_environmentprivate
summary()vdj_pipe::Pipe_environment
summary_output_path_vdj_pipe::Pipe_environmentprivate
t1_vdj_pipe::Pipe_environmentprivate
t2_vdj_pipe::Pipe_environmentprivate
t3_vdj_pipe::Pipe_environmentprivate
vm_vdj_pipe::Pipe_environmentprivate
write_config(boost::property_tree::ptree const &pt, std::string const &path) const vdj_pipe::Pipe_environment