vdj_pipe
pipeline for processing DNA sequence data
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#include <string>
#include "boost/range.hpp"
#include "boost/range/as_literal.hpp"
#include "vdj_pipe/detail/string_ref.hpp"
#include "vdj_pipe/exception.hpp"
#include "vdj_pipe/nucleotide_index.hpp"
#include "vdj_pipe/sequence_interval.hpp"
Go to the source code of this file.
Namespaces | |
vdj_pipe | |
Main namespace of vdj_pipe library. | |
Functions | |
template<class Range > | |
std::string | vdj_pipe::complement (Range const &r) |
std::string | vdj_pipe::transform (const boost::string_ref seq, sequence_interval const &si, const bool reverse) |
Reverse-complement (optionally) a portion of a sequence. More... | |
part of vdj_pipe project.
Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2013