vdj_pipe
pipeline for processing DNA sequence data
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#include <algorithm>
#include <ostream>
#include "boost/assert.hpp"
#include "boost/cstdint.hpp"
#include "boost/integer/static_log2.hpp"
#include "vdj_pipe/nucleotide_index.hpp"
#include "vdj_pipe/exception.hpp"
#include "vdj_pipe/detail/string_ref.hpp"
Go to the source code of this file.
Classes | |
class | vdj_pipe::Seq_fls< N, S > |
store short sequence in an integer More... | |
Namespaces | |
vdj_pipe | |
Main namespace of vdj_pipe library. | |
Functions | |
template<class Seq > | |
int | vdj_pipe::identity (Seq const &s1, const boost::string_ref s2, scoring_matrix_t const &sm, const std::size_t=0) |
template<unsigned N, typename S > | |
int | vdj_pipe::identity (const Seq_fls< N, S > seq1, const Seq_fls< N, S > seq2, scoring_matrix_t const &sm, const unsigned len=N) |
part of vdj_pipe project.
Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2013