step_factory_paired.hpp

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#ifndef STEP_FACTORY_PAIRED_HPP_
#define STEP_FACTORY_PAIRED_HPP_
#include "vdj_pipe/step/all_paired_read_steps.hpp"
#include "vdj_pipe/step/step_variant_paired_read.hpp"
#include "vdj_pipe/config.hpp"
#include "vdj_pipe/step/step_factory.hpp"

namespace vdj_pipe{

VDJ_PIPE_DECL step_variant_paired create_step_paired(
         Vm_access_paired const& vma,
         boost::property_tree::ptree const& pt,
         Pipe_environment& pe
);

template<> inline Config_paired_reads::processing_step
create_step<Config_paired_reads>(
         Config_paired_reads::value_map_access const& vma,
         boost::property_tree::ptree const& pt,
         Pipe_environment& pe
) {
   return create_step_paired(vma, pt, pe);
}

}//namespace vdj_pipe
#endif /* STEP_FACTORY_PAIRED_HPP_ */