7 #ifndef WRITE_SEQUENCE_STEP_HPP_ 8 #define WRITE_SEQUENCE_STEP_HPP_ 11 #include "boost/property_tree/ptree_fwd.hpp" 12 #include "boost/shared_ptr.hpp" 40 void summary(std::ostream& os)
const;
bool reverse_
Definition: write_sequence_step.hpp:46
Select output file based on variables in value map.
Definition: file_ostream_variant.hpp:27
Definition: write_sequence_step.hpp:22
void finish()
Definition: write_sequence_step.hpp:39
bool trim_
Definition: write_sequence_step.hpp:45
Definition: value_map_access_single.hpp:16
bool skip_empty_
Definition: write_sequence_step.hpp:47
Main namespace of vdj_pipe library.
Definition: keywords_variable.hpp:11
Definition: pipe_environment.hpp:26
#define VDJ_PIPE_DECL
Definition: config.hpp:23
#define VDJ_PIPE_STATIC_STRING_METHOD(name, val)
Definition: keyword_struct_macro.hpp:12
std::size_t n_seq_
Definition: write_sequence_step.hpp:44
Definition: step_base_single.hpp:16
bpt::ptree ptree
Definition: processing_step_utils.hpp:19
File_ostream_variant fov_
Definition: write_sequence_step.hpp:43