vdj_pipe
pipeline for processing DNA sequence data
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#include "boost/assert.hpp"
#include "boost/foreach.hpp"
#include "boost/shared_ptr.hpp"
#include "vdj_pipe/config.hpp"
#include "vdj_pipe/detail/disable_warnings.hpp"
#include "vdj_pipe/detail/id_map.hpp"
#include "vdj_pipe/detail/string_ref.hpp"
#include "vdj_pipe/exception.hpp"
#include "vdj_pipe/gdst/common_subsequence.hpp"
#include "vdj_pipe/gdst/depth_first_iterator.hpp"
#include "vdj_pipe/gdst/nodes.hpp"
#include "vdj_pipe/gdst/pattern_iterator.hpp"
#include "vdj_pipe/nucleotide_index.hpp"
#include "vdj_pipe/object_ids.hpp"
#include "vdj_pipe/sequence_entry.hpp"
Go to the source code of this file.
Classes | |
struct | vdj_pipe::gdst::Match |
Results of matching pattern to suffix tree. More... | |
class | vdj_pipe::gdst::Gdst |
Generalized DNA suffix tree. More... | |
struct | vdj_pipe::gdst::Gdst::Err |
Namespaces | |
vdj_pipe | |
Main namespace of vdj_pipe library. | |
vdj_pipe::gdst | |
part of vdj_pipe project.
Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2013