7 #ifndef BLANK_STEP_HPP_ 8 #define BLANK_STEP_HPP_ 11 #include "boost/property_tree/ptree_fwd.hpp" 16 class Pipe_environment;
Blank_step(vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe)
Definition: blank_step.hpp:30
void finish()
Definition: blank_step.hpp:38
Value_map vma_type
Definition: blank_step.hpp:22
Main namespace of vdj_pipe library.
Definition: keywords_variable.hpp:11
Definition: blank_step.hpp:20
Definition: pipe_environment.hpp:26
Provides access to standard values for single read pipeline.
Definition: value_names.hpp:33
#define VDJ_PIPE_STATIC_STRING_METHOD(name, val)
Definition: keyword_struct_macro.hpp:12
void reset_access(Value_ids_single const &ids)
Definition: blank_step.hpp:36
Store values mapped against name strings and value IDs.
Definition: value_map.hpp:23
void run()
Definition: blank_step.hpp:37
bpt::ptree ptree
Definition: processing_step_utils.hpp:19
void summary(std::ostream &) const
Definition: blank_step.hpp:39