vdj_pipe
pipeline for processing DNA sequence data
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#include <ostream>
#include <string>
#include <vector>
#include "boost/assert.hpp"
#include "boost/foreach.hpp"
#include "boost/lexical_cast.hpp"
#include "boost/utility/string_ref.hpp"
#include "vdj_pipe/sequence_record.hpp"
Go to the source code of this file.
Namespaces | |
vdj_pipe | |
Main namespace of vdj_pipe library. | |
Functions | |
template<class Ch , class Tr > | |
std::basic_ostream< Ch, Tr > & | vdj_pipe::print_split (std::basic_ostream< Ch, Tr > &os, const boost::string_ref str, const Ch delim, const unsigned length) |
print string splitting it into parts of equal length More... | |
template<class Ch , class Tr > | |
std::basic_ostream< Ch, Tr > & | vdj_pipe::print_fasta (std::basic_ostream< Ch, Tr > &os, std::string const &name, Seq_record::sequence const &sequence, const unsigned length=80) |
print FASTA record More... | |
template<class Ch , class Tr > | |
std::basic_ostream< Ch, Tr > & | vdj_pipe::print_fasta (std::basic_ostream< Ch, Tr > &os, const std::string &name, const boost::string_ref sequence, const unsigned length=80) |
print FASTA record More... | |
template<class Ch , class Tr > | |
std::basic_ostream< Ch, Tr > & | vdj_pipe::print_qual (std::basic_ostream< Ch, Tr > &os, std::string const &name, Qual_record::quality const &qual, const unsigned length=80) |
print QUAL record More... | |
template<class Ch , class Tr > | |
std::basic_ostream< Ch, Tr > & | vdj_pipe::print_fastq (std::basic_ostream< Ch, Tr > &os, std::string const &name, Seq_record::sequence const &sequence, Qual_record::quality const &qual, const int offset=33) |
print FASTQ record More... | |
part of vdj_pipe project.
Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2013