vdj_pipe
pipeline for processing DNA sequence data
external_mid_infile.hpp
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1 
7 #ifndef EXTERNAL_MID_INFILE_HPP_
8 #define EXTERNAL_MID_INFILE_HPP_
9 #include "vdj_pipe/config.hpp"
12 
13 namespace vdj_pipe{
14 
15 
21 public:
23  vma_type const& vma,
26  );
27 
28  void run();
29 };
30 
31 }//namespace vdj_pipe
32 #endif /* EXTERNAL_MID_INFILE_HPP_ */
Definition: step_base_paired_emid.hpp:16
Access to value map for paired eMID read pipeline and processing steps.
Definition: value_map_access_paired.hpp:145
Main namespace of vdj_pipe library.
Definition: keywords_variable.hpp:11
Definition: pipe_environment.hpp:26
Look for external MIDs in separate files.
Definition: external_mid_infile.hpp:18
#define VDJ_PIPE_DECL
Definition: config.hpp:23
Definition: external_mid_base.hpp:30
bpt::ptree ptree
Definition: processing_step_utils.hpp:19