ssw_cpp.cpp File Reference

#include "ssw_cpp.h"
#include <sstream>
#include "ssw.h"

Include dependency graph for ssw_cpp.cpp:

Namespaces
	anonymous_namespace{ssw_cpp.cpp}
	StripedSmithWaterman

Macros
#define	VDJ_PIPE_SOURCE

Functions
void	anonymous_namespace{ssw_cpp.cpp}::BuildSwScoreMatrix (const uint8_t &match_score, const uint8_t &mismatch_penalty, int8_t *matrix)
void	anonymous_namespace{ssw_cpp.cpp}::ConvertAlignment (const s_align &s_al, const int &query_len, StripedSmithWaterman::Alignment *al)
int	anonymous_namespace{ssw_cpp.cpp}::CalculateNumberMismatch (const StripedSmithWaterman::Alignment &al, int8_t const *ref, int8_t const *query)
void	anonymous_namespace{ssw_cpp.cpp}::SetFlag (const StripedSmithWaterman::Filter &filter, uint8_t *flag)

Variables
static int8_t	anonymous_namespace{ssw_cpp.cpp}::kBaseTranslation [128]

Macro Definition Documentation

#define VDJ_PIPE_SOURCE