gdst_search.hpp File Reference

#include <string>
#include <vector>
#include "boost/algorithm/string/predicate.hpp"
#include "boost/algorithm/string/classification.hpp"
#include "boost/assert.hpp"
#include "boost/foreach.hpp"
#include "vdj_pipe/detail/disable_warnings.hpp"
#include "vdj_pipe/gdst/gdst.hpp"
#include "vdj_pipe/sequence_store.hpp"

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Namespaces
	vdj_pipe
	Main namespace of vdj_pipe library.

Functions
template<class MinLength >
void	vdj_pipe::remove_subsequences (Seq_store &ss, gdst::Gdst &st, MinLength const &min_len)
	identify unique sequences in sequence store, insert them into suffix tree, and remove non-unique ones More...

Detailed Description

part of vdj_pipe project.

Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2013