vdj_pipe
pipeline for processing DNA sequence data
step_factory_single.hpp
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1 
7 #ifndef STEP_FACTORY_SINGLE_HPP_
8 #define STEP_FACTORY_SINGLE_HPP_
11 #include "vdj_pipe/config.hpp"
13 
14 namespace vdj_pipe{
15 
19  Vm_access_single const& vma,
21  Pipe_environment& pe
22 );
23 
31 ) {
32  return create_step_single(vma, pt, pe);
33 }
34 
35 }//namespace vdj_pipe
36 #endif /* STEP_FACTORY_SINGLE_HPP_ */
Config_single_reads::processing_step create_step< Config_single_reads >(Config_single_reads::value_map_access const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe)
Definition: step_factory_single.hpp:27
Definition: value_map_access_single.hpp:16
step_variant_single processing_step
Definition: step_variant_single_read.hpp:72
Main namespace of vdj_pipe library.
Definition: keywords_variable.hpp:11
Definition: pipe_environment.hpp:26
#define VDJ_PIPE_DECL
Definition: config.hpp:23
boost::make_recursive_variant_over< step::single_read_vector >::type step_variant_single
Definition: step_variant_single_read.hpp:66
bpt::ptree ptree
Definition: processing_step_utils.hpp:19
step_variant_single create_step_single(Vm_access_single const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe)
Definition: step_factory_single.cpp:18