vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Average_quality_filter Member List

This is the complete list of members for vdj_pipe::Average_quality_filter, including all inherited members.

delimiter() const (defined in vdj_pipe::detail::Step_base)vdj_pipe::detail::Step_baseinline
Filter_base(vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe) (defined in vdj_pipe::detail::Filter_base)vdj_pipe::detail::Filter_baseprotected
finish() (defined in vdj_pipe::Average_quality_filter)vdj_pipe::Average_quality_filterinline
nf_ (defined in vdj_pipe::detail::Filter_base)vdj_pipe::detail::Filter_baseprotected
pass(const bool b) (defined in vdj_pipe::detail::Filter_base)vdj_pipe::detail::Filter_baseinlineprotected
pass_id_ (defined in vdj_pipe::detail::Filter_base)vdj_pipe::detail::Filter_baseprotected
pe (defined in vdj_pipe::Average_quality_filter)vdj_pipe::Average_quality_filter
pt (defined in vdj_pipe::Average_quality_filter)vdj_pipe::Average_quality_filter
qual_type typedef (defined in vdj_pipe::detail::Step_base)vdj_pipe::detail::Step_base
reset_access(Value_ids_single const &ids) (defined in vdj_pipe::detail::Step_base_single)vdj_pipe::detail::Step_base_singleinline
run() (defined in vdj_pipe::Average_quality_filter)vdj_pipe::Average_quality_filter
seq_type typedef (defined in vdj_pipe::detail::Step_base)vdj_pipe::detail::Step_base
Step_base(boost::property_tree::ptree const &pt, Pipe_environment const &pe) (defined in vdj_pipe::detail::Step_base)vdj_pipe::detail::Step_base
Step_base_single(vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment const &pe) (defined in vdj_pipe::detail::Step_base_single)vdj_pipe::detail::Step_base_singleinlineprotected
summary(std::ostream &os) const (defined in vdj_pipe::detail::Filter_base)vdj_pipe::detail::Filter_base
VDJ_PIPE_KEYWORD_STRUCT(kwds,(passed_name)) (defined in vdj_pipe::detail::Filter_base)vdj_pipe::detail::Filter_baseprotected
VDJ_PIPE_STATIC_STRING_METHOD(comment,"discard reads with average quality score lower than minimal") Average_quality_filter(Vm_access_single const &vma (defined in vdj_pipe::Average_quality_filter)vdj_pipe::Average_quality_filter
vma_ (defined in vdj_pipe::detail::Step_base_single)vdj_pipe::detail::Step_base_singleprotected
vma_type typedef (defined in vdj_pipe::detail::Step_base_single)vdj_pipe::detail::Step_base_single