vdj_pipe
pipeline for processing DNA sequence data
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This is the complete list of members for vdj_pipe::Qual_stats, including all inherited members.
delimiter() const (defined in vdj_pipe::detail::Step_base) | vdj_pipe::detail::Step_base | inline |
finish() (defined in vdj_pipe::Qual_stats) | vdj_pipe::Qual_stats | |
Qual_stats(Vm_access_single const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe) (defined in vdj_pipe::Qual_stats) | vdj_pipe::Qual_stats | |
qual_type typedef (defined in vdj_pipe::detail::Step_base) | vdj_pipe::detail::Step_base | |
reset_access(Value_ids_single const &ids) (defined in vdj_pipe::detail::Step_base_single) | vdj_pipe::detail::Step_base_single | inline |
run() (defined in vdj_pipe::Qual_stats) | vdj_pipe::Qual_stats | |
seq_type typedef (defined in vdj_pipe::detail::Step_base) | vdj_pipe::detail::Step_base | |
Step_base(boost::property_tree::ptree const &pt, Pipe_environment const &pe) (defined in vdj_pipe::detail::Step_base) | vdj_pipe::detail::Step_base | |
Step_base_single(vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment const &pe) (defined in vdj_pipe::detail::Step_base_single) | vdj_pipe::detail::Step_base_single | inlineprotected |
summary(std::ostream &) const (defined in vdj_pipe::detail::Step_base) | vdj_pipe::detail::Step_base | inline |
VDJ_PIPE_STATIC_STRING_METHOD(comment,"calculate quality statistics of sequencing reads") VDJ_PIPE_STATIC_STRING_METHOD(description (defined in vdj_pipe::Qual_stats) | vdj_pipe::Qual_stats | |
vma_ (defined in vdj_pipe::detail::Step_base_single) | vdj_pipe::detail::Step_base_single | protected |
vma_type typedef (defined in vdj_pipe::detail::Step_base_single) | vdj_pipe::detail::Step_base_single |