vdj_pipe
pipeline for processing DNA sequence data
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This is the complete list of members for vdj_pipe::Seq_store, including all inherited members.
begin() const (defined in vdj_pipe::Seq_store) | vdj_pipe::Seq_store | inline |
by_size() const | vdj_pipe::Seq_store | inline |
by_size(const unsigned size) const | vdj_pipe::Seq_store | inline |
by_size_range(const unsigned from, const unsigned to=std::numeric_limits< unsigned >::max()) const | vdj_pipe::Seq_store | inline |
const_iterator typedef (defined in vdj_pipe::Seq_store) | vdj_pipe::Seq_store | |
empty() const (defined in vdj_pipe::Seq_store) | vdj_pipe::Seq_store | inline |
end() const (defined in vdj_pipe::Seq_store) | vdj_pipe::Seq_store | inline |
insert(const Read_id rid, const boost::string_ref seq) | vdj_pipe::Seq_store | inline |
iterator typedef (defined in vdj_pipe::Seq_store) | vdj_pipe::Seq_store | |
maps_from(const Seq_id sid) const (defined in vdj_pipe::Seq_store) | vdj_pipe::Seq_store | inline |
maps_to(const Read_id iid) const (defined in vdj_pipe::Seq_store) | vdj_pipe::Seq_store | inline |
operator[](const Seq_id sid) const (defined in vdj_pipe::Seq_store) | vdj_pipe::Seq_store | inline |
remove_subsequence(const Seq_id sid, Super_seqs const &ss) (defined in vdj_pipe::Seq_store) | vdj_pipe::Seq_store | inline |
seq_map typedef (defined in vdj_pipe::Seq_store) | vdj_pipe::Seq_store | |
seq_map_ptr typedef (defined in vdj_pipe::Seq_store) | vdj_pipe::Seq_store | |
Seq_store() (defined in vdj_pipe::Seq_store) | vdj_pipe::Seq_store | inline |
sequence_map() (defined in vdj_pipe::Seq_store) | vdj_pipe::Seq_store | inline |
size() const (defined in vdj_pipe::Seq_store) | vdj_pipe::Seq_store | inline |
sub_seq_set typedef (defined in vdj_pipe::Seq_store) | vdj_pipe::Seq_store | |
super_seq_set typedef (defined in vdj_pipe::Seq_store) | vdj_pipe::Seq_store |