vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Seq_store Member List

This is the complete list of members for vdj_pipe::Seq_store, including all inherited members.

begin() const (defined in vdj_pipe::Seq_store)vdj_pipe::Seq_storeinline
by_size() const vdj_pipe::Seq_storeinline
by_size(const unsigned size) const vdj_pipe::Seq_storeinline
by_size_range(const unsigned from, const unsigned to=std::numeric_limits< unsigned >::max()) const vdj_pipe::Seq_storeinline
const_iterator typedef (defined in vdj_pipe::Seq_store)vdj_pipe::Seq_store
empty() const (defined in vdj_pipe::Seq_store)vdj_pipe::Seq_storeinline
end() const (defined in vdj_pipe::Seq_store)vdj_pipe::Seq_storeinline
insert(const Read_id rid, const boost::string_ref seq)vdj_pipe::Seq_storeinline
iterator typedef (defined in vdj_pipe::Seq_store)vdj_pipe::Seq_store
maps_from(const Seq_id sid) const (defined in vdj_pipe::Seq_store)vdj_pipe::Seq_storeinline
maps_to(const Read_id iid) const (defined in vdj_pipe::Seq_store)vdj_pipe::Seq_storeinline
operator[](const Seq_id sid) const (defined in vdj_pipe::Seq_store)vdj_pipe::Seq_storeinline
remove_subsequence(const Seq_id sid, Super_seqs const &ss) (defined in vdj_pipe::Seq_store)vdj_pipe::Seq_storeinline
seq_map typedef (defined in vdj_pipe::Seq_store)vdj_pipe::Seq_store
seq_map_ptr typedef (defined in vdj_pipe::Seq_store)vdj_pipe::Seq_store
Seq_store() (defined in vdj_pipe::Seq_store)vdj_pipe::Seq_storeinline
sequence_map() (defined in vdj_pipe::Seq_store)vdj_pipe::Seq_storeinline
size() const (defined in vdj_pipe::Seq_store)vdj_pipe::Seq_storeinline
sub_seq_set typedef (defined in vdj_pipe::Seq_store)vdj_pipe::Seq_store
super_seq_set typedef (defined in vdj_pipe::Seq_store)vdj_pipe::Seq_store