vdj_pipe
pipeline for processing DNA sequence data
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This is the complete list of members for vdj_pipe::Vm_access_paired, including all inherited members.
begin() const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
clear_values() (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
const_iterator typedef (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | |
description_fwd() const (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
description_fwd(std::string const &descr) (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
description_rev() const (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
description_rev(std::string const &descr) (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
end() const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
file_read_count() const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
file_read_count_incr() (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
file_read_count_reset() (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
find_id(std::string const &name) const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
ids_ (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | protected |
insert_name(std::string const &name) (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
insert_new_name(std::string const &name) (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
interval_fwd() const (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
interval_fwd(sequence_interval const &si) (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
interval_rev() const (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
interval_rev(sequence_interval const &si) (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
iterator typedef (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | |
name(const Val_id vid) const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
operator[](const Val_id vid) const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
operator[](const Val_id vid) (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
qual_type typedef (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | |
quality(const Val_id qual_id, const Val_id trim_id, const bool trimmed, const bool reverse_compl) const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inlineprotected |
quality_fwd() const (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
quality_fwd(const bool trim) const (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
quality_fwd(qual_type const &qual) (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
quality_path_fwd() const (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
quality_path_fwd(std::string const &s) (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
quality_path_rev() const (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
quality_path_rev(std::string const &s) (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
quality_rev() const (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
quality_rev(const bool trim, const bool reverse) const (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
quality_rev(qual_type const &qual) (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
read_count() const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
read_count_incr() (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
read_count_reset() (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
read_id() const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
read_id(std::string const &id) (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
read_id_nothrow() const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
seq_file_name() const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
seq_file_name(std::string const &fn) (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
seq_type typedef (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | |
sequence(const Val_id seq_id, const Val_id trim_id, const bool trimmed, const bool reverse_compl) const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inlineprotected |
sequence_fwd() const (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
sequence_fwd(const bool trim) const (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
sequence_fwd(seq_type const &seq) (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
sequence_path_fwd() const (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
sequence_path_fwd(std::string const &s) (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
sequence_path_rev() const (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
sequence_path_rev(std::string const &s) (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
sequence_rev() const (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
sequence_rev(const bool trim, const bool reverse) const (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
sequence_rev(seq_type const &seq) (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |
size() const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
str_nothrow(const Val_id id) const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
value(std::string const &name) const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
value(const Val_id id) const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
value_id(std::string const &name) const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
Value_map() (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
value_ptr(std::string const &name) const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
value_ptr(const Val_id id) const (defined in vdj_pipe::Value_map) | vdj_pipe::Value_map | inline |
Vm_access_paired() (defined in vdj_pipe::Vm_access_paired) | vdj_pipe::Vm_access_paired | inline |