vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Vm_access_single Member List

This is the complete list of members for vdj_pipe::Vm_access_single, including all inherited members.

begin() const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
clear_values() (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
const_iterator typedef (defined in vdj_pipe::Value_map)vdj_pipe::Value_map
description() const (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_singleinline
description(std::string const &descr) (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_singleinline
end() const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
file_read_count() const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
file_read_count_incr() (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
file_read_count_reset() (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
find_id(std::string const &name) const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
insert_name(std::string const &name) (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
insert_new_name(std::string const &name) (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
interval() const vdj_pipe::Vm_access_singleinline
interval(sequence_interval const &si)vdj_pipe::Vm_access_singleinline
is_reverse() const vdj_pipe::Vm_access_singleinline
iterator typedef (defined in vdj_pipe::Value_map)vdj_pipe::Value_map
name(const Val_id vid) const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
operator[](const Val_id vid) const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
operator[](const Val_id vid) (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
qual_type typedef (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_single
quality() const (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_singleinline
quality(qual_type const &qual) (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_singleinline
quality(const bool trimmed, const bool reverse_compl) const (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_singleinline
quality(const Val_id qual_id, const Val_id trim_id, const bool trimmed, const bool reverse_compl) const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinlineprotected
quality_path() const (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_singleinline
quality_path(std::string const &s) (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_singleinline
read_count() const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
read_count_incr() (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
read_count_reset() (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
read_id() const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
read_id(std::string const &id) (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
read_id_nothrow() const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
reset(Value_ids_single const &ids) (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_singleinline
seq_file_name() const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
seq_file_name(std::string const &fn) (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
seq_type typedef (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_single
sequence() const (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_singleinline
sequence(seq_type const &seq) (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_singleinline
sequence(const bool trimmed, const bool reverse_compl) const vdj_pipe::Vm_access_singleinline
sequence(const Val_id seq_id, const Val_id trim_id, const bool trimmed, const bool reverse_compl) const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinlineprotected
sequence_path() const (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_singleinline
sequence_path(std::string const &s) (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_singleinline
set_empty() (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_singleinline
set_reverse(const bool rev) (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_singleinline
size() const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
str_nothrow(const Val_id id) const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
trim(sequence_interval const &si) (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_singleinline
value(std::string const &name) const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
value(const Val_id id) const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
value_id(std::string const &name) const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
Value_map() (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
value_ptr(std::string const &name) const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
value_ptr(const Val_id id) const (defined in vdj_pipe::Value_map)vdj_pipe::Value_mapinline
Vm_access_single(Value_names::single_read_names const &names) (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_singleinline
Vm_access_single(Value_map const &vm, Value_names::single_read_names const &names) (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_singleinline
Vm_access_single(Value_map const &vm, Value_ids_single const &ids) (defined in vdj_pipe::Vm_access_single)vdj_pipe::Vm_access_singleinline