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vdj_pipe
pipeline for processing DNA sequence data
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This is the complete list of members for vdj_pipe::gdst::Gdst, including all inherited members.
| child(const Branch_id bid1, const Nucleotide n) const (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| child(const Branch_id bid1, const seq_type seq) const (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| child(const Branch_id bid1, const Nucleotide n, const Branch_id bid2) (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| Common_substrings (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | friend |
| depth_first() const (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| find(const seq_type seq, const Branch_id bid, unsigned min_d=0) const (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| find_longest(const seq_type seq, std::size_t min_len=0) const | vdj_pipe::gdst::Gdst | |
| find_overlaping(const boost::string_ref seq, detail::Vector_set< Seq_id > &vs, std::size_t min_overlap=0) const | vdj_pipe::gdst::Gdst | |
| Gdst() (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| Gdst(seq_map_ptr ss) (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inlineexplicit |
| Gdst_stats (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | friend |
| insert(const Seq_id sid) (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | |
| leaf(const Branch_id bid) const (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| letter(const Branch_id bid, const unsigned i) const (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| letter(const Branch_id bid, const Nucleotide n, const unsigned i) const (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| match_type typedef (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | |
| match_vector typedef (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | |
| operator[](const Branch_id bid) const (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| operator[](const Leaf_id lid) const (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| operator[](const Seq_id sid) const (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| root() const (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| seq_map typedef (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | |
| seq_map_ptr typedef (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | |
| sequence_map() const (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| sequence_map() (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| size() const (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| suffix(const Seq_id sid, const unsigned len) const (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| suffix(const Leaf_id lid, const unsigned len) const (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| suffix(Branch const &b) const (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| suffix(const Branch_id bid) const (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | inline |
| Ukkonen_inserter (defined in vdj_pipe::gdst::Gdst) | vdj_pipe::gdst::Gdst | friend |
1.8.11
