vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::External_mid_infile Member List

This is the complete list of members for vdj_pipe::External_mid_infile, including all inherited members.

delimiter() const vdj_pipe::detail::Step_baseinline
Err typedefvdj_pipe::detail::External_mid_base
External_mid_infile(vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe)vdj_pipe::External_mid_infile
find_mid(const boost::string_ref seq, Value_map &vm)vdj_pipe::detail::External_mid_baseprotected
mid_size() const vdj_pipe::detail::External_mid_baseprotected
qual_type typedefvdj_pipe::detail::Step_base
run()vdj_pipe::External_mid_infile
seq_type typedefvdj_pipe::detail::Step_base
Step_base(boost::property_tree::ptree const &pt, Pipe_environment const &pe)vdj_pipe::detail::Step_base
Step_base_paired_emid(vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe)vdj_pipe::detail::Step_base_paired_emidinlineprotected
summary(std::ostream &) const vdj_pipe::detail::Step_baseinline
VDJ_PIPE_KEYWORD_STRUCT(kwds,(fasta_path)(pairs_path)(value_name)(min_score)(max_mismatches)(require_best))vdj_pipe::detail::External_mid_baseprotected
vma_vdj_pipe::detail::Step_base_paired_emidprotected
vma_type typedefvdj_pipe::detail::Step_base_paired_emid