vdj_pipe
pipeline for processing DNA sequence data
|
This is the complete list of members for vdj_pipe::Group_unique, including all inherited members.
check_duplicates(std::string const &seq, Group_count const &gc) | vdj_pipe::Group_unique | inlineprivate |
find_duplicates(const Seq_id sid, Group_count const &gc) | vdj_pipe::Group_unique | inlineprivate |
find_id(const Seq_id sid) const | vdj_pipe::Group_unique | inlineprivate |
find_shared(xstats &xs1, xstats &xs2) | vdj_pipe::Group_unique | inline |
find_shared(const Seq_id sid, Group_count const &gc) | vdj_pipe::Group_unique | inlineprivate |
gml_ | vdj_pipe::Group_unique | private |
group_redundancy_histogram(xstats &h) const | vdj_pipe::Group_unique | inline |
Group_unique(Seq_store &ss, Read_ginfo_store const &rgs, const unsigned n_mids, const Mapped_id mid, Get_match_length const &gml) | vdj_pipe::Group_unique | inline |
is_only_group(const Seq_id sid, const Mapped_id mid) const | vdj_pipe::Group_unique | inlineprivate |
m_ | vdj_pipe::Group_unique | private |
mid_ | vdj_pipe::Group_unique | private |
n_mids_ | vdj_pipe::Group_unique | private |
n_reads() const | vdj_pipe::Group_unique | inline |
pair typedef | vdj_pipe::Group_unique | private |
redundancy_histogram(xstats &h) const | vdj_pipe::Group_unique | inline |
rgs_ | vdj_pipe::Group_unique | private |
seq_map typedef | vdj_pipe::Group_unique | private |
ss_ | vdj_pipe::Group_unique | private |
st_ | vdj_pipe::Group_unique | private |
store_stats(const unsigned seq_len, const unsigned match_pos, const unsigned match_len, super_seq const &super, Group_count const &gc) | vdj_pipe::Group_unique | inlineprivate |
write_group_unique(File_ostream &fos, const unsigned min_duplicates, const bool consensus_trim, const std::string group_name) const | vdj_pipe::Group_unique | inline |
write_redundancy(std::ostream &os, const char delim) const | vdj_pipe::Group_unique | inline |
write_unique(File_ostream &fos, const unsigned min_duplicates) const | vdj_pipe::Group_unique | inline |
xstats typedef | vdj_pipe::Group_unique | private |