vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Group_unique Member List

This is the complete list of members for vdj_pipe::Group_unique, including all inherited members.

check_duplicates(std::string const &seq, Group_count const &gc)vdj_pipe::Group_uniqueinlineprivate
find_duplicates(const Seq_id sid, Group_count const &gc)vdj_pipe::Group_uniqueinlineprivate
find_id(const Seq_id sid) const vdj_pipe::Group_uniqueinlineprivate
find_shared(xstats &xs1, xstats &xs2)vdj_pipe::Group_uniqueinline
find_shared(const Seq_id sid, Group_count const &gc)vdj_pipe::Group_uniqueinlineprivate
gml_vdj_pipe::Group_uniqueprivate
group_redundancy_histogram(xstats &h) const vdj_pipe::Group_uniqueinline
Group_unique(Seq_store &ss, Read_ginfo_store const &rgs, const unsigned n_mids, const Mapped_id mid, Get_match_length const &gml)vdj_pipe::Group_uniqueinline
is_only_group(const Seq_id sid, const Mapped_id mid) const vdj_pipe::Group_uniqueinlineprivate
m_vdj_pipe::Group_uniqueprivate
mid_vdj_pipe::Group_uniqueprivate
n_mids_vdj_pipe::Group_uniqueprivate
n_reads() const vdj_pipe::Group_uniqueinline
pair typedefvdj_pipe::Group_uniqueprivate
redundancy_histogram(xstats &h) const vdj_pipe::Group_uniqueinline
rgs_vdj_pipe::Group_uniqueprivate
seq_map typedefvdj_pipe::Group_uniqueprivate
ss_vdj_pipe::Group_uniqueprivate
st_vdj_pipe::Group_uniqueprivate
store_stats(const unsigned seq_len, const unsigned match_pos, const unsigned match_len, super_seq const &super, Group_count const &gc)vdj_pipe::Group_uniqueinlineprivate
write_group_unique(File_ostream &fos, const unsigned min_duplicates, const bool consensus_trim, const std::string group_name) const vdj_pipe::Group_uniqueinline
write_redundancy(std::ostream &os, const char delim) const vdj_pipe::Group_uniqueinline
write_unique(File_ostream &fos, const unsigned min_duplicates) const vdj_pipe::Group_uniqueinline
xstats typedefvdj_pipe::Group_uniqueprivate