vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Seq_file_entry Member List

This is the complete list of members for vdj_pipe::Seq_file_entry, including all inherited members.

begin() const vdj_pipe::Seq_file_entryinline
check(Input_manager const &im)vdj_pipe::Seq_file_entryprivate
const_iterator typedefvdj_pipe::Seq_file_entry
end() const vdj_pipe::Seq_file_entryinline
fastq enum valuevdj_pipe::Seq_file_entryprivate
get_str(const Val_id id, std::string const &msg) const vdj_pipe::Seq_file_entryinlineprivate
has_emid() const vdj_pipe::Seq_file_entryinline
has_qual_file() const vdj_pipe::Seq_file_entryinline
has_quality() const vdj_pipe::Seq_file_entryinline
is_paired() const vdj_pipe::Seq_file_entryinline
iterator typedefvdj_pipe::Seq_file_entry
map_vdj_pipe::Seq_file_entryprivate
map_t typedefvdj_pipe::Seq_file_entry
mid() const vdj_pipe::Seq_file_entryinline
mid_vdj_pipe::Seq_file_entryprivate
mid_rev() const vdj_pipe::Seq_file_entryinline
mid_rev_vdj_pipe::Seq_file_entryprivate
none enum valuevdj_pipe::Seq_file_entryprivate
qt_vdj_pipe::Seq_file_entryprivate
qual enum valuevdj_pipe::Seq_file_entryprivate
qual_vdj_pipe::Seq_file_entryprivate
qual_rev() const vdj_pipe::Seq_file_entryinline
qual_rev_vdj_pipe::Seq_file_entryprivate
qual_type enum namevdj_pipe::Seq_file_entryprivate
quality() const vdj_pipe::Seq_file_entryinline
seq_vdj_pipe::Seq_file_entryprivate
Seq_file_entry(map_t const &m, Input_manager const &im, Value_map const &vm)vdj_pipe::Seq_file_entry
seq_rev() const vdj_pipe::Seq_file_entryinline
seq_rev_vdj_pipe::Seq_file_entryprivate
sequence() const vdj_pipe::Seq_file_entryinline
value_type typedefvdj_pipe::Seq_file_entry