vdj_pipe
pipeline for processing DNA sequence data
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vdj_pipe
Seq_file_map
vdj_pipe::Seq_file_map Member List
This is the complete list of members for
vdj_pipe::Seq_file_map
, including all inherited members.
at
(const Path_id id) const
vdj_pipe::Seq_file_map
inline
begin
() const
vdj_pipe::Seq_file_map
inline
citer1
typedef
vdj_pipe::Seq_file_map
private
citer2
typedef
vdj_pipe::Seq_file_map
private
clear
()
vdj_pipe::Seq_file_map
inline
const_iterator
typedef
vdj_pipe::Seq_file_map
empty
() const
vdj_pipe::Seq_file_map
inline
end
() const
vdj_pipe::Seq_file_map
inline
erase
(const Path_id id)
vdj_pipe::Seq_file_map
inline
file_map
typedef
vdj_pipe::Seq_file_map
private
find
(std::string const &path) const
vdj_pipe::Seq_file_map
inline
frm_
vdj_pipe::Seq_file_map
private
frw2rev
(const Path_id frw_id) const
vdj_pipe::Seq_file_map
inline
get
(const Path_id pid, pair_map const &pm)
vdj_pipe::Seq_file_map
inline
private
static
i_
vdj_pipe::Seq_file_map
private
id_index
typedef
vdj_pipe::Seq_file_map
private
id_iterator
typedef
vdj_pipe::Seq_file_map
private
index1
typedef
vdj_pipe::Seq_file_map
private
index2
typedef
vdj_pipe::Seq_file_map
private
insert
(Seq_file const &file)
vdj_pipe::Seq_file_map
inline
iterator
typedef
vdj_pipe::Seq_file_map
map_
vdj_pipe::Seq_file_map
private
mid2seq
(const Path_id mid_id) const
vdj_pipe::Seq_file_map
inline
operator[]
(const Path_id id) const
vdj_pipe::Seq_file_map
inline
pair_map
typedef
vdj_pipe::Seq_file_map
private
path_index
typedef
vdj_pipe::Seq_file_map
private
path_iterator
typedef
vdj_pipe::Seq_file_map
private
qual2seq
(const Path_id qual_id) const
vdj_pipe::Seq_file_map
inline
rev2frw
(const Path_id rev_id) const
vdj_pipe::Seq_file_map
inline
seq2mid
(const Path_id seq_id) const
vdj_pipe::Seq_file_map
inline
seq2qual
(const Path_id seq_id) const
vdj_pipe::Seq_file_map
inline
Seq_file_map
()
vdj_pipe::Seq_file_map
inline
set_mid
(const Path_id seq_id, const Path_id mid_id)
vdj_pipe::Seq_file_map
inline
set_paired
(const Path_id frw_id, const Path_id rev_id)
vdj_pipe::Seq_file_map
inline
set_seq_qual
(const Path_id seq_id, const Path_id qual_id)
vdj_pipe::Seq_file_map
inline
size
() const
vdj_pipe::Seq_file_map
inline
smm_
vdj_pipe::Seq_file_map
private
sqm_
vdj_pipe::Seq_file_map
private
value_type
typedef
vdj_pipe::Seq_file_map
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