vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Seq_file_map Member List

This is the complete list of members for vdj_pipe::Seq_file_map, including all inherited members.

at(const Path_id id) const vdj_pipe::Seq_file_mapinline
begin() const vdj_pipe::Seq_file_mapinline
citer1 typedefvdj_pipe::Seq_file_mapprivate
citer2 typedefvdj_pipe::Seq_file_mapprivate
clear()vdj_pipe::Seq_file_mapinline
const_iterator typedefvdj_pipe::Seq_file_map
empty() const vdj_pipe::Seq_file_mapinline
end() const vdj_pipe::Seq_file_mapinline
erase(const Path_id id)vdj_pipe::Seq_file_mapinline
file_map typedefvdj_pipe::Seq_file_mapprivate
find(std::string const &path) const vdj_pipe::Seq_file_mapinline
frm_vdj_pipe::Seq_file_mapprivate
frw2rev(const Path_id frw_id) const vdj_pipe::Seq_file_mapinline
get(const Path_id pid, pair_map const &pm)vdj_pipe::Seq_file_mapinlineprivatestatic
i_vdj_pipe::Seq_file_mapprivate
id_index typedefvdj_pipe::Seq_file_mapprivate
id_iterator typedefvdj_pipe::Seq_file_mapprivate
index1 typedefvdj_pipe::Seq_file_mapprivate
index2 typedefvdj_pipe::Seq_file_mapprivate
insert(Seq_file const &file)vdj_pipe::Seq_file_mapinline
iterator typedefvdj_pipe::Seq_file_map
map_vdj_pipe::Seq_file_mapprivate
mid2seq(const Path_id mid_id) const vdj_pipe::Seq_file_mapinline
operator[](const Path_id id) const vdj_pipe::Seq_file_mapinline
pair_map typedefvdj_pipe::Seq_file_mapprivate
path_index typedefvdj_pipe::Seq_file_mapprivate
path_iterator typedefvdj_pipe::Seq_file_mapprivate
qual2seq(const Path_id qual_id) const vdj_pipe::Seq_file_mapinline
rev2frw(const Path_id rev_id) const vdj_pipe::Seq_file_mapinline
seq2mid(const Path_id seq_id) const vdj_pipe::Seq_file_mapinline
seq2qual(const Path_id seq_id) const vdj_pipe::Seq_file_mapinline
Seq_file_map()vdj_pipe::Seq_file_mapinline
set_mid(const Path_id seq_id, const Path_id mid_id)vdj_pipe::Seq_file_mapinline
set_paired(const Path_id frw_id, const Path_id rev_id)vdj_pipe::Seq_file_mapinline
set_seq_qual(const Path_id seq_id, const Path_id qual_id)vdj_pipe::Seq_file_mapinline
size() const vdj_pipe::Seq_file_mapinline
smm_vdj_pipe::Seq_file_mapprivate
sqm_vdj_pipe::Seq_file_mapprivate
value_type typedefvdj_pipe::Seq_file_map