vdj_pipe::Seq_map_aligned Member List

This is the complete list of members for vdj_pipe::Seq_map_aligned, including all inherited members.

begin() const	vdj_pipe::Seq_map_aligned	inline
best_match(const boost::string_ref seq, const std::size_t min_match, const bool track_mismatches) const	vdj_pipe::Seq_map_aligned	inline
check(const boost::string_ref seq)	vdj_pipe::Seq_map_aligned	inlineprivatestatic
const_iterator typedef	vdj_pipe::Seq_map_aligned
end() const	vdj_pipe::Seq_map_aligned	inline
find_overlaping(const boost::string_ref seq, const std::size_t min_match) const	vdj_pipe::Seq_map_aligned	inline
id_map typedef	vdj_pipe::Seq_map_aligned	private
idm_	vdj_pipe::Seq_map_aligned	private
insert(std::string const &id, std::string seq, const bool reverse)	vdj_pipe::Seq_map_aligned	inline
iterator typedef	vdj_pipe::Seq_map_aligned
load_file(std::string const &fasta, const bool reverse)	vdj_pipe::Seq_map_aligned	inline
max_id() const	vdj_pipe::Seq_map_aligned	inline
seq(const Seq_id sid) const	vdj_pipe::Seq_map_aligned	inline
seq_id(const Seq_id sid) const	vdj_pipe::Seq_map_aligned	inline
seq_map typedef	vdj_pipe::Seq_map_aligned	private
Seq_map_aligned()	vdj_pipe::Seq_map_aligned	inline
size() const	vdj_pipe::Seq_map_aligned	inline
st_	vdj_pipe::Seq_map_aligned	private
suffix_tree typedef	vdj_pipe::Seq_map_aligned	private