vdj_pipe
pipeline for processing DNA sequence data
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vdj_pipe
Seq_map_full
vdj_pipe::Seq_map_full Member List
This is the complete list of members for
vdj_pipe::Seq_map_full
, including all inherited members.
allow_duplicate_seq_
vdj_pipe::Seq_map_full
private
begin
() const
vdj_pipe::Seq_map_full
inline
const_iterator
typedef
vdj_pipe::Seq_map_full
end
() const
vdj_pipe::Seq_map_full
inline
find_closest
(const Seq s, match_type &m, scoring_matrix_t const &sm) const
vdj_pipe::Seq_map_full
inline
find_exact
(seq_type const &seq) const
vdj_pipe::Seq_map_full
inline
find_exact
(const boost::string_ref seq) const
vdj_pipe::Seq_map_full
inline
insert
(std::string name, std::string const &seq)
vdj_pipe::Seq_map_full
inline
iterator
typedef
vdj_pipe::Seq_map_full
match_type
typedef
vdj_pipe::Seq_map_full
max_id
() const
vdj_pipe::Seq_map_full
inline
max_len
() const
vdj_pipe::Seq_map_full
inline
max_len_
vdj_pipe::Seq_map_full
private
min_len
() const
vdj_pipe::Seq_map_full
inline
min_len_
vdj_pipe::Seq_map_full
private
name
(const Mid_id id) const
vdj_pipe::Seq_map_full
inline
name_map
typedef
vdj_pipe::Seq_map_full
private
names_
vdj_pipe::Seq_map_full
private
seq
(const Mid_id id) const
vdj_pipe::Seq_map_full
inline
seq_map
typedef
vdj_pipe::Seq_map_full
private
Seq_map_full
(const bool allow_duplicate_seq=false)
vdj_pipe::Seq_map_full
inline
explicit
seq_string
(const Mid_id id) const
vdj_pipe::Seq_map_full
inline
seq_type
typedef
vdj_pipe::Seq_map_full
seqs_
vdj_pipe::Seq_map_full
private
to_string
(seq_type const &sv)
vdj_pipe::Seq_map_full
inline
static
to_vector
(const boost::string_ref s)
vdj_pipe::Seq_map_full
inline
private
static
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