vdj_pipe
pipeline for processing DNA sequence data
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vdj_pipe
Seq_map_short
vdj_pipe::Seq_map_short Member List
This is the complete list of members for
vdj_pipe::Seq_map_short
, including all inherited members.
allow_duplicate_seq_
vdj_pipe::Seq_map_short
private
begin
() const
vdj_pipe::Seq_map_short
inline
const_iterator
typedef
vdj_pipe::Seq_map_short
end
() const
vdj_pipe::Seq_map_short
inline
find_closest
(const Seq s, match_type &m, scoring_matrix_t const &sm) const
vdj_pipe::Seq_map_short
inline
find_exact
(const seq_type seq) const
vdj_pipe::Seq_map_short
inline
find_exact
(const boost::string_ref seq) const
vdj_pipe::Seq_map_short
inline
insert
(std::string name, std::string const &seq)
vdj_pipe::Seq_map_short
inline
iterator
typedef
vdj_pipe::Seq_map_short
match_type
typedef
vdj_pipe::Seq_map_short
max_id
() const
vdj_pipe::Seq_map_short
inline
mid_size_
vdj_pipe::Seq_map_short
private
name
(const Mid_id id) const
vdj_pipe::Seq_map_short
inline
name_map
typedef
vdj_pipe::Seq_map_short
private
names_
vdj_pipe::Seq_map_short
private
seq
(const Mid_id id) const
vdj_pipe::Seq_map_short
inline
seq_map
typedef
vdj_pipe::Seq_map_short
private
Seq_map_short
(const bool allow_duplicate_seq)
vdj_pipe::Seq_map_short
inline
explicit
seq_size
() const
vdj_pipe::Seq_map_short
inline
seq_string
(const Mid_id id) const
vdj_pipe::Seq_map_short
inline
seq_type
typedef
vdj_pipe::Seq_map_short
seqs_
vdj_pipe::Seq_map_short
private
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