vdj_pipe
pipeline for processing DNA sequence data
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vdj_pipe
Seq_store
vdj_pipe::Seq_store Member List
This is the complete list of members for
vdj_pipe::Seq_store
, including all inherited members.
begin
() const
vdj_pipe::Seq_store
inline
by_size
() const
vdj_pipe::Seq_store
inline
by_size
(const unsigned size) const
vdj_pipe::Seq_store
inline
by_size_range
(const unsigned from, const unsigned to=std::numeric_limits< unsigned >::max()) const
vdj_pipe::Seq_store
inline
const_iterator
typedef
vdj_pipe::Seq_store
empty
() const
vdj_pipe::Seq_store
inline
end
() const
vdj_pipe::Seq_store
inline
get_seq
typedef
vdj_pipe::Seq_store
private
get_size
typedef
vdj_pipe::Seq_store
private
i2s_
vdj_pipe::Seq_store
private
info_to_seq
typedef
vdj_pipe::Seq_store
private
insert
(const Read_id rid, const boost::string_ref seq)
vdj_pipe::Seq_store
inline
iterator
typedef
vdj_pipe::Seq_store
maps_from
(const Seq_id sid) const
vdj_pipe::Seq_store
inline
maps_to
(const Read_id iid) const
vdj_pipe::Seq_store
inline
operator[]
(const Seq_id sid) const
vdj_pipe::Seq_store
inline
remove_subsequence
(const Seq_id sid, Super_seqs const &ss)
vdj_pipe::Seq_store
inline
s2i_
vdj_pipe::Seq_store
private
seq_index
typedef
vdj_pipe::Seq_store
private
seq_index_init
(seq_map const &sm)
vdj_pipe::Seq_store
inline
private
static
seq_map
typedef
vdj_pipe::Seq_store
seq_map_ptr
typedef
vdj_pipe::Seq_store
seq_mi_t
typedef
vdj_pipe::Seq_store
private
Seq_store
()
vdj_pipe::Seq_store
inline
seq_to_info
typedef
vdj_pipe::Seq_store
private
sequence_map
()
vdj_pipe::Seq_store
inline
si_
vdj_pipe::Seq_store
private
size
() const
vdj_pipe::Seq_store
inline
size_index
typedef
vdj_pipe::Seq_store
private
size_iterator
typedef
vdj_pipe::Seq_store
private
size_range
typedef
vdj_pipe::Seq_store
private
sm_
vdj_pipe::Seq_store
private
sub_seq_set
typedef
vdj_pipe::Seq_store
super_seq_set
typedef
vdj_pipe::Seq_store
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