vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Seq_store Member List

This is the complete list of members for vdj_pipe::Seq_store, including all inherited members.

begin() const vdj_pipe::Seq_storeinline
by_size() const vdj_pipe::Seq_storeinline
by_size(const unsigned size) const vdj_pipe::Seq_storeinline
by_size_range(const unsigned from, const unsigned to=std::numeric_limits< unsigned >::max()) const vdj_pipe::Seq_storeinline
const_iterator typedefvdj_pipe::Seq_store
empty() const vdj_pipe::Seq_storeinline
end() const vdj_pipe::Seq_storeinline
get_seq typedefvdj_pipe::Seq_storeprivate
get_size typedefvdj_pipe::Seq_storeprivate
i2s_vdj_pipe::Seq_storeprivate
info_to_seq typedefvdj_pipe::Seq_storeprivate
insert(const Read_id rid, const boost::string_ref seq)vdj_pipe::Seq_storeinline
iterator typedefvdj_pipe::Seq_store
maps_from(const Seq_id sid) const vdj_pipe::Seq_storeinline
maps_to(const Read_id iid) const vdj_pipe::Seq_storeinline
operator[](const Seq_id sid) const vdj_pipe::Seq_storeinline
remove_subsequence(const Seq_id sid, Super_seqs const &ss)vdj_pipe::Seq_storeinline
s2i_vdj_pipe::Seq_storeprivate
seq_index typedefvdj_pipe::Seq_storeprivate
seq_index_init(seq_map const &sm)vdj_pipe::Seq_storeinlineprivatestatic
seq_map typedefvdj_pipe::Seq_store
seq_map_ptr typedefvdj_pipe::Seq_store
seq_mi_t typedefvdj_pipe::Seq_storeprivate
Seq_store()vdj_pipe::Seq_storeinline
seq_to_info typedefvdj_pipe::Seq_storeprivate
sequence_map()vdj_pipe::Seq_storeinline
si_vdj_pipe::Seq_storeprivate
size() const vdj_pipe::Seq_storeinline
size_index typedefvdj_pipe::Seq_storeprivate
size_iterator typedefvdj_pipe::Seq_storeprivate
size_range typedefvdj_pipe::Seq_storeprivate
sm_vdj_pipe::Seq_storeprivate
sub_seq_set typedefvdj_pipe::Seq_store
super_seq_set typedefvdj_pipe::Seq_store