This is the complete list of members for vdj_pipe::gdst::Gdst, including all inherited members.

add_to_leaf(const Branch_id bid, const Seq_id sid)	vdj_pipe::gdst::Gdst	inlineprivate
bm_	vdj_pipe::gdst::Gdst	private
branch_map typedef	vdj_pipe::gdst::Gdst	private
check_edge(Branch_id &an, unsigned &aei, unsigned &al, const boost::string_ref seq) const	vdj_pipe::gdst::Gdst	inlineprivate
child(const Branch_id bid1, const Nucleotide n) const	vdj_pipe::gdst::Gdst	inline
child(const Branch_id bid1, const seq_type seq) const	vdj_pipe::gdst::Gdst	inline
child(const Branch_id bid1, const Nucleotide n, const Branch_id bid2)	vdj_pipe::gdst::Gdst	inline
children_map typedef	vdj_pipe::gdst::Gdst	private
cm_	vdj_pipe::gdst::Gdst	private
collect_sequences(const gdst::Branch_id nid, detail::Vector_set< Seq_id > &vs) const	vdj_pipe::gdst::Gdst	inlineprivate
Common_substrings class	vdj_pipe::gdst::Gdst	friend
depth_first() const	vdj_pipe::gdst::Gdst	inline
edge_length(const Branch_id bid, const Nucleotide n) const	vdj_pipe::gdst::Gdst	inlineprivate
edge_length(const Branch_id bid, const seq_type suff) const	vdj_pipe::gdst::Gdst	inlineprivate
find(const seq_type seq, const Branch_id bid, unsigned min_d=0) const	vdj_pipe::gdst::Gdst	inline
find_longest(const seq_type seq, std::size_t min_len=0) const	vdj_pipe::gdst::Gdst
find_overlaping(const boost::string_ref seq, detail::Vector_set< Seq_id > &vs, std::size_t min_overlap=0) const	vdj_pipe::gdst::Gdst
Gdst()	vdj_pipe::gdst::Gdst	inline
Gdst(seq_map_ptr ss)	vdj_pipe::gdst::Gdst	inlineexplicit
Gdst_stats class	vdj_pipe::gdst::Gdst	friend
insert(const Seq_id sid)	vdj_pipe::gdst::Gdst
leaf(const Branch_id bid) const	vdj_pipe::gdst::Gdst	inline
leaf_from_branch(const Branch_id bid1, const Nucleotide n1, const unsigned i, const Seq_id sid)	vdj_pipe::gdst::Gdst	inlineprivate
leaf_map typedef	vdj_pipe::gdst::Gdst	private
letter(const Branch_id bid, const unsigned i) const	vdj_pipe::gdst::Gdst	inline
letter(const Branch_id bid, const Nucleotide n, const unsigned i) const	vdj_pipe::gdst::Gdst	inline
lm_	vdj_pipe::gdst::Gdst	private
match_type typedef	vdj_pipe::gdst::Gdst
match_vector typedef	vdj_pipe::gdst::Gdst
operator[](const Branch_id bid) const	vdj_pipe::gdst::Gdst	inline
operator[](const Leaf_id lid) const	vdj_pipe::gdst::Gdst	inline
operator[](const Seq_id sid) const	vdj_pipe::gdst::Gdst	inline
root() const	vdj_pipe::gdst::Gdst	inline
root_	vdj_pipe::gdst::Gdst	private
seq_map typedef	vdj_pipe::gdst::Gdst
seq_map_ptr typedef	vdj_pipe::gdst::Gdst
seq_type typedef	vdj_pipe::gdst::Gdst	private
sequence_map() const	vdj_pipe::gdst::Gdst	inline
sequence_map()	vdj_pipe::gdst::Gdst	inline
size() const	vdj_pipe::gdst::Gdst	inline
split_edge(const Branch_id bid1, const Nucleotide n1, const unsigned i, const Nucleotide n2)	vdj_pipe::gdst::Gdst	inlineprivate
ss_	vdj_pipe::gdst::Gdst	private
suffix(const Seq_id sid, const unsigned len) const	vdj_pipe::gdst::Gdst	inline
suffix(const Leaf_id lid, const unsigned len) const	vdj_pipe::gdst::Gdst	inline
suffix(Branch const &b) const	vdj_pipe::gdst::Gdst	inline
suffix(const Branch_id bid) const	vdj_pipe::gdst::Gdst	inline
suffix_link(const Branch_id bid1, const Branch_id bid2)	vdj_pipe::gdst::Gdst	inlineprivate
suffix_link(const Branch_id bid) const	vdj_pipe::gdst::Gdst	inlineprivate
Ukkonen_inserter class	vdj_pipe::gdst::Gdst	friend