vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::gdst::Ukkonen_inserter Member List

This is the complete list of members for vdj_pipe::gdst::Ukkonen_inserter, including all inherited members.

active_child() const vdj_pipe::gdst::Ukkonen_inserterinlineprivate
active_child(const Branch_id bid)vdj_pipe::gdst::Ukkonen_inserterinlineprivate
active_edge() const vdj_pipe::gdst::Ukkonen_inserterinlineprivate
active_length_vdj_pipe::gdst::Ukkonen_inserterprivate
active_node_vdj_pipe::gdst::Ukkonen_inserterprivate
add_to_leaf(const Branch_id bid)vdj_pipe::gdst::Ukkonen_inserterinlineprivate
edge_length() const vdj_pipe::gdst::Ukkonen_inserterinlineprivate
has_next() const vdj_pipe::gdst::Ukkonen_inserterinline
insert(Gdst &st, const Seq_id sid)vdj_pipe::gdst::Ukkonen_inserterinlinestatic
insert()vdj_pipe::gdst::Ukkonen_inserterinline
leaf_from_branch(const Branch_id bid, const Nucleotide n1)vdj_pipe::gdst::Ukkonen_inserterinlineprivate
letter(const unsigned i) const vdj_pipe::gdst::Ukkonen_inserterinlineprivate
md_vdj_pipe::gdst::Ukkonen_inserterprivate
next()vdj_pipe::gdst::Ukkonen_inserterinline
prev_branch_vdj_pipe::gdst::Ukkonen_inserterprivate
prev_leaf_vdj_pipe::gdst::Ukkonen_inserterprivate
set_active_node(const Branch_id bid)vdj_pipe::gdst::Ukkonen_inserterinlineprivate
set_branch_sl(const Branch_id bid)vdj_pipe::gdst::Ukkonen_inserterinlineprivate
set_leaf_sl(const Branch_id bid)vdj_pipe::gdst::Ukkonen_inserterinlineprivate
sid_vdj_pipe::gdst::Ukkonen_inserterprivate
split_active_edge(const unsigned i, const Nucleotide n2)vdj_pipe::gdst::Ukkonen_inserterinlineprivate
st_vdj_pipe::gdst::Ukkonen_inserterprivate
suff_vdj_pipe::gdst::Ukkonen_inserterprivate
Ukkonen_inserter(Gdst &st, const Seq_id sid)vdj_pipe::gdst::Ukkonen_inserterinline