vdj_pipe::match::Match_element_aligned Member List

This is the complete list of members for vdj_pipe::match::Match_element_aligned, including all inherited members.

finish()	vdj_pipe::match::Match_element_aligned	inline
gsm_	vdj_pipe::match::Match_element_aligned	private
identity_val_id_	vdj_pipe::match::Match_element_aligned	private
Match_element_aligned(Value_map const &vm, std::string const &match_value_name, std::string const &score_value_name, std::string const &identity_value_name, Relative_interval const &ri, detail::name_seq_vector const &sv, const int min_score, const unsigned min_match_len, const bool track_mismatches)	vdj_pipe::match::Match_element_aligned	inline
min_match_len_	vdj_pipe::match::Match_element_aligned	private
min_score_	vdj_pipe::match::Match_element_aligned	private
name_val_id_	vdj_pipe::match::Match_element_aligned	private
operator()(const sequence seq, quality const &, sequence_interval const &si)	vdj_pipe::match::Match_element_aligned	inline
quality typedef	vdj_pipe::match::Match_element_aligned
ri_	vdj_pipe::match::Match_element_aligned	private
score_val_id_	vdj_pipe::match::Match_element_aligned	private
sequence typedef	vdj_pipe::match::Match_element_aligned
track_mismatches_	vdj_pipe::match::Match_element_aligned	private
vm_	vdj_pipe::match::Match_element_aligned	private