vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::match::Match_element_ambiguous Member List

This is the complete list of members for vdj_pipe::match::Match_element_ambiguous, including all inherited members.

finish()vdj_pipe::match::Match_element_ambiguousinline
Match_element_ambiguous(Value_map const &vm, std::string const &match_value_name, std::string const &score_value_name, Relative_interval const &ri, detail::name_seq_vector const &sv, const int min_score, const bool ignore_dups, const bool require_best, const bool track_mismatches)vdj_pipe::match::Match_element_ambiguousinline
min_score_vdj_pipe::match::Match_element_ambiguousprivate
name_val_id_vdj_pipe::match::Match_element_ambiguousprivate
operator()(const sequence seq, quality const &qual, sequence_interval const &si)vdj_pipe::match::Match_element_ambiguousinline
quality typedefvdj_pipe::match::Match_element_ambiguous
require_best_vdj_pipe::match::Match_element_ambiguousprivate
ri_vdj_pipe::match::Match_element_ambiguousprivate
score_val_id_vdj_pipe::match::Match_element_ambiguousprivate
scoring_matrix_vdj_pipe::match::Match_element_ambiguousprivate
sequence typedefvdj_pipe::match::Match_element_ambiguous
sm_vdj_pipe::match::Match_element_ambiguousprivate
vm_vdj_pipe::match::Match_element_ambiguousprivate