vdj_pipe::match::Match_element_short Member List

This is the complete list of members for vdj_pipe::match::Match_element_short, including all inherited members.

finish()	vdj_pipe::match::Match_element_short	inline
Match_element_short(Value_map const &vm, std::string const &match_value_name, std::string const &score_value_name, Relative_interval const &ri, detail::name_seq_vector const &sv, const int min_score, const bool ignore_dups, const bool require_best, const bool track_mismatches)	vdj_pipe::match::Match_element_short	inline
min_score_	vdj_pipe::match::Match_element_short	private
name_val_id_	vdj_pipe::match::Match_element_short	private
operator()(const sequence seq, quality const &qual, sequence_interval const &si)	vdj_pipe::match::Match_element_short	inline
quality typedef	vdj_pipe::match::Match_element_short
require_best_	vdj_pipe::match::Match_element_short	private
ri_	vdj_pipe::match::Match_element_short	private
score_val_id_	vdj_pipe::match::Match_element_short	private
scoring_matrix_	vdj_pipe::match::Match_element_short	private
sequence typedef	vdj_pipe::match::Match_element_short
sm_	vdj_pipe::match::Match_element_short	private
vm_	vdj_pipe::match::Match_element_short	private