This is the complete list of members for vdj_pipe::match::Match_element_short, including all inherited members.
finish() | vdj_pipe::match::Match_element_short | inline |
Match_element_short(Value_map const &vm, std::string const &match_value_name, std::string const &score_value_name, Relative_interval const &ri, detail::name_seq_vector const &sv, const int min_score, const bool ignore_dups, const bool require_best, const bool track_mismatches) | vdj_pipe::match::Match_element_short | inline |
min_score_ | vdj_pipe::match::Match_element_short | private |
name_val_id_ | vdj_pipe::match::Match_element_short | private |
operator()(const sequence seq, quality const &qual, sequence_interval const &si) | vdj_pipe::match::Match_element_short | inline |
quality typedef | vdj_pipe::match::Match_element_short | |
require_best_ | vdj_pipe::match::Match_element_short | private |
ri_ | vdj_pipe::match::Match_element_short | private |
score_val_id_ | vdj_pipe::match::Match_element_short | private |
scoring_matrix_ | vdj_pipe::match::Match_element_short | private |
sequence typedef | vdj_pipe::match::Match_element_short | |
sm_ | vdj_pipe::match::Match_element_short | private |
vm_ | vdj_pipe::match::Match_element_short | private |