Functions
	VDJ_PIPE_KEYWORD_STRUCT (Single,(description)(sequence)(quality)(trim)(is_reverse)(seq_file_path)(qual_file_path))

	VDJ_PIPE_KEYWORD_STRUCT (Forward,(description_fwd)(sequence_fwd)(quality_fwd)(trim_fwd)(seq_file_path_fwd)(qual_file_path_fwd)(forward))

	VDJ_PIPE_KEYWORD_STRUCT (Reverse,(description_rev)(sequence_rev)(quality_rev)(trim_rev)(seq_file_path_rev)(qual_file_path_rev)(reverse))

	VDJ_PIPE_KEYWORD_STRUCT (Merged,(sequence_merged)(quality_merged)(trim_merged))

	VDJ_PIPE_KEYWORD_STRUCT (Emid,(emid_fwd)(emid_rev)(emid_file_path_fwd)(emid_file_path_rev))

	VDJ_PIPE_KEYWORD_STRUCT (Root,(base_path_input)(base_path_output)(config_output_path)(csv_file_delimiter)(external_MIDs)(max_file_reads)(max_reads)(paired_reads)(plots_list_path)(quality_scores)(summary_output_path)(input_csv)(input)(steps))

Function Documentation

vdj_pipe::kwds::VDJ_PIPE_KEYWORD_STRUCT	(	Single	,
		(description)(sequence)(quality)(trim)(is_reverse)(seq_file_path)(qual_file_path)
	)

vdj_pipe::kwds::VDJ_PIPE_KEYWORD_STRUCT	(	Root	,
		(base_path_input)(base_path_output)(config_output_path)(csv_file_delimiter)(external_MIDs)(max_file_reads)(max_reads)(paired_reads)(plots_list_path)(quality_scores)(summary_output_path)(input_csv)(input)(steps)
	)

vdj_pipe::kwds::VDJ_PIPE_KEYWORD_STRUCT	(	Forward	,
		(description_fwd)(sequence_fwd)(quality_fwd)(trim_fwd)(seq_file_path_fwd)(qual_file_path_fwd)(forward)
	)

vdj_pipe::kwds::VDJ_PIPE_KEYWORD_STRUCT	(	Reverse	,
		(description_rev)(sequence_rev)(quality_rev)(trim_rev)(seq_file_path_rev)(qual_file_path_rev)(reverse)
	)

vdj_pipe::kwds::VDJ_PIPE_KEYWORD_STRUCT	(	Merged	,
		(sequence_merged)(quality_merged)(trim_merged)
	)

vdj_pipe::kwds::VDJ_PIPE_KEYWORD_STRUCT	(	Emid	,
		(emid_fwd)(emid_rev)(emid_file_path_fwd)(emid_file_path_rev)
	)

Functions